MmuEX0053255 @ mm9
Exon Skipping
Gene
ENSMUSG00000044807 | Zfp354c
Description
zinc finger protein 354C [Source:MGI Symbol;Acc:MGI:1353621]
Coordinates
chr11:50630621-50631437:-
Coord C1 exon
chr11:50631311-50631437
Coord A exon
chr11:50630791-50630861
Coord C2 exon
chr11:50630621-50630713
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTATGCCCTAAATCTCCAGTGT
3' ss Score
5.88
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCCTGTGACCTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAAGCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
TGTCCCCCTGGGAAGTGAGTTACCTGTGTGTCCCACCTTGCAAGACTGAACTTCTCTGCTTTCTAGGTCAG
Seq C2 exon
GGTTTCAGGCTTCAATACCTCCTGTGATTGGCAAGCTGCAAAAAGGGCAAGATCCCTGCATGGAAAGAGAAGCCCCTGAAGACACCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044807_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.361
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTTCAGCCAGGATGAGT
R:
GGCTTCTCTTTCCATGCAGGG
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types