MmuEX0053382 @ mm9
Exon Skipping
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:36578542-36586547:-
Coord C1 exon
chr7:36586457-36586547
Coord A exon
chr7:36584827-36584956
Coord C2 exon
chr7:36578542-36580637
Length
130 bp
Sequences
Splice sites
3' ss Seq
TATTGGCCTTCTATTCGCAGGCC
3' ss Score
9.08
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGGATTGTGAATATCGATCCAGGAGACTATCTGTTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq A exon
GCCACAGAGTGATGGTGTTAGTGGGAGAAGCAGCATCAGGAGAACAGAAGTGCCAAAGCCAGAAATAGATTTGTAGAGAGCAGCCATCCAGGAAGAACTGACCTGTTAAGAAGCAACCAATCCGGGGCTG
Seq C2 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACCGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGTTGACCAACAAAGAAAAGCTAAAGCAGATCCATTGGTCCACGTTATCCAGAAGCTAAGCAAGATAGTGGGGCATGAGAAGTCACAAAAATGTCTACTGATTGGGAAAAAGCGCCCACGTCCAAGTGAGACAGCAAACTCTCTTGAAAAGCTAGAGAACTGTGAGATTCCAGCTAAAGCCACTGAGTCCCCTGCTGCTGGGGTTAGGAAAACCGAGATGTCACAGGCAAGTTCCACTCTTGCTTCAAATGATGGGAAGGCTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCACCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCATGGGCAGCAGCATGACGTGATGCTCATGTGCTCGGAGTGCCACGCCACCTCCAGGAGCCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452-'3-3,'3-1,5-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.456
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAAGACACTGGCTCTGC
R:
GGGCGCTTTTTCCCAATCAGT
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types