MmuEX0053385 @ mm9
Exon Skipping
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:36576667-36586547:-
Coord C1 exon
chr7:36586457-36586547
Coord A exon
chr7:36580315-36580637
Coord C2 exon
chr7:36576667-36576781
Length
323 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTGCACTGTCTCTAGATA
3' ss Score
8.09
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CTGGATTGTGAATATCGATCCAGGAGACTATCTGTTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq A exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACCGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGTTGACCAACAAAGAAAAGCTAAAGCAGATCCATTGGTCCACGTTATCCAGAAGCTAAGCAAGATAGTGGGGCATGAGAAGTCACAAAAATGTCTACTGATTGGGAAAAAGCGCCCACGTCCAAGTGAGACAGCAAACTCTCTTGAAAAGCTAGAGAACTGTGAGATTCCAGCTAAAGCCACTGAGTCCCCTGCTGCTGGGGTTAGGAAAACCGAGATGTCACAG
Seq C2 exon
AGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCCTGCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCGCTGATGGAAAGTGTGCTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.456 C2=0.359
Domain overlap (PFAM):
C1:
NA
A:
PF139091=zf-H2C2_5=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATTGTGAATATCGATCCAGGA
R:
CTTCCTGAGCACACTTTCCATCA
Band lengths:
206-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: