RnoEX0101441 @ rn6
Exon Skipping
Gene
ENSRNOG00000013565 | Zfp507
Description
zinc finger protein 507 [Source:RGD Symbol;Acc:1307017]
Coordinates
chr1:92108829-92118511:-
Coord C1 exon
chr1:92118421-92118511
Coord A exon
chr1:92111025-92112574
Coord C2 exon
chr1:92108829-92108943
Length
1550 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTGCATTGTTCTAGATA
3' ss Score
8.43
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGATTGTGAATATTGATCCAGGAGACTATCAATTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq A exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACAGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGCTGACCAACAAAGAAAACCTAAAGCAGATCCATTGGTCCATGTCATCCAGAAGTTAAGCAAGATAGTGGGGCACGAAAAGTCACAAAAATGTCTTCTGATTGGGAAAAAGCGCCAACGCCCAAGTGAGATACCACACTCTCTTGAGAGGGTAGAGAACTGTGAGATCCCAGCTAAAGCAGCCGGGCCCCCTGCTGCTGGGGTTAGGGAAGCCGAGATGTCACAGGCCTGTCCCACCCTTGCCGCCAATGACGGGAAGACTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCGCCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCACGGGCAGCAGCACGACGTGATGCTCATGTGCTCAGAGTGCCACGCCACCTCCAGAAGCCAGCAAGAGCTGGAAGCGCATGTGGTGAGTGAGCATGAGAACAGTGCCAGCAGCCATGCCCGCCAAGGAGCCACAGAAAGAAAGAGTGAGACCTTGGTGGACATTCCAGTGAACGTGGGCAGCCCACAGACCCATGCTGTCCAGAGTGCAGCTGTGGCAGAGACGGGGCGGAGGAAGTGGTATGCATATGAACAGTACGGCATGTACCGGTGCTTGTTCTGCAGCTATACCTGTGGCCAGCAGCGGATGTTAAAGACACATGCTTGGAAACATGCAGGGGAAGTTAACTGTTCCTATCCAATCTTTGAGAATGAAAATGAGCCCCTTGGTCTTCTGGCTTCTTCTGTGTCTGCTGCACCTGGTGGGGTTGATGCAGTCGTCATTGCTATTGGGGACAGCGAACTCAGCATCCACAATGGGCCATCTGTACAAGTACAGATTTGCAGCTCCGAACCACCATCGTCTTCATCTCCTTTAGAACAGAGCACAGAGGAGGGAGTACACCTACGCCAGGCAGTCACCCTGGACTCTAACGAGGAAGAAATGCTGGAGGTGATGTCTGATTCTGAGGAGAATCTGTTTGCTGATAGTTTGCTCTCTTCGGCACAGAAAATCATTAGCAGTAGCCCAAACAAAAAAGGTCACGTGAACGTCATTGTGGAACGTTTGCCAAGTGCTGAAGAAACCCTCCCGCCAAAACATTTCCTCATGAATGCTGAAATGGAAGAGGGGAAGAGCCCGAGCCCCGCCGAAGCTCAGACTGGGTGTGGAGGAGCAGGAACTATGTACCATGCTGATAAGTGTACTGTTGATATCGGGGGGTTGATCATCGGCTGGAGCAGTGCAGAGAAGAAAGACAGTGAGCTAAGTAAGGGCCTGGCTCCTGATGAGAATGCCCCACCAGGACGGAGAAGGACAAATTCTGAGTCTCTCAGGCTGCACTCCTTAGCTGCAGAAGCCCTTGTCACCATGCCAATAAGAGCTGCTGAACTAACAAGAGCCAGCCTTGGGCACTATGGGGACATAAACCTTTTAGATCCAGACACTGGACAAAGGCAG
Seq C2 exon
AGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCATGCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCACCGATGGAAAGTGTGTTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013565_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.451 C2=0.521
Domain overlap (PFAM):
C1:
NA
A:
PF139091=zf-H2C2_5=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATTGTGAATATTGATCCAGGA
R:
CTTCCTGAACACACTTTCCATCG
Band lengths:
206-1756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]