HsaEX6094269 @ hg19
Exon Skipping
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32838151-32847639:+
Coord C1 exon
chr19:32838151-32838244
Coord A exon
chr19:32843735-32845863
Coord C2 exon
chr19:32847522-32847639
Length
2129 bp
Sequences
Splice sites
3' ss Seq
TTTTACATTATCCTTTTTAGATA
3' ss Score
9.51
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGG
Seq A exon
ATATGGAAGAAAGTAGCAGTGTTGCCATGTTGGTGCCAGATATTGGGGAACAGGAAGCTATACTGACTGCTGAAAGTATCATCAGTCCTTCATTGGAAATTGATGAACAAAGAAAAACTAAACCAGATCCATTAATCCATGTTATCCAGAAGTTAAGCAAGATAGTGGAAAATGAAAAGTCACAAAAATGTCTTTTAATTGGGAAGAAACGCCCACGTTCAAGTGCTGCAACACACTCTCTTGAAACCCAAGAACTTTGTGAGATTCCGGCTAAAGTAATCCAGTCACCTGCTGCTGATACTAGAAGGGCTGAGATGTCACAAACAAATTTTACCCCTGACACTCTTGCCCAGAATGAAGGGAAGGCTATGTCTTATCAGTGTAGCCTTTGTAAGTTTCTATCATCATCCTTTTCCGTGTTAAAAGATCATATTAAGCAACATGGTCAGCAAAATGAAGTGATACTGATGTGCTCAGAGTGCCATATTACATCTAGAAGCCAGGAGGAACTTGAAGCCCACGTGGTGAATGACCATGACAATGATGCCAATATCCACACCCAATCCAAAGCCCAACAGTGCGTAAGCCCCTCCAGCTCTTTGTGTCGGAAAACCACAGAAAGAAATGAAACCATTCCAGATATCCCAGTAAGTGTGGACAATCTACAGACTCATACTGTCCAAACTGCATCTGTGGCAGAAATGGGTAGGAGGAAATGGTATGCATACGAACAGTACGGCATGTATCGATGCTTGTTTTGTAGTTATACTTGTGGCCAGCAGAGAATGTTGAAAACACACGCTTGGAAACATGCTGGGGAGGTTGATTGCTCCTATCCAATCTTTGAAAATGAAAATGAACCCCTAGGCCTGCTGGATTCTTCAGCAGCTGCTGCGCCTGGTGGGGTCGATGCAGTCGTCATTGCTATTGGAGAGAGTGAACTGAGTATCCACAATGGGCCATCAGTGCAAGTGCAGATTTGCAGCTCAGAACAGTTATCATCTTCATCTCCTTTAGAACAGAGTGCAGAAAGAGGAGTACACCTAAGTCAGTCAGTTACCCTGGACCCCAATGAGGAAGAAATGCTAGAAGTGATTTCTGATGCAGAGGAGAATCTGATTCCTGATAGCCTGCTTACATCAGCACAGAAAATCATCAGCAGCAGCCCCAATAAAAAAGGGCATGTTAACGTGATAGTGGAGCGATTGCCAAGTGCTGAAGAAACCCTTTCACAGAAGCGCTTCCTCATGAACACTGAAATGGAAGAAGGGAAGGACCTGAGCCTGACAGAAGCTCAGATTGGGCGCGAAGGAATGGATGATGTTTATCGTGCTGATAAATGTACTGTTGATATTGGGGGATTGATCATAGGCTGGAGCAGTTCAGAGAAAAAAGACGAGTTAATGAATAAAGGCCTGGCTACTGATGAGAATGCCCCACCAGGCCGGAGAAGGACAAATTCTGAGTCTCTTCGATTACACTCATTAGCTGCAGAAGCCCTTGTCACAATGCCTATAAGAGCTGCAGAGTTGACAAGAGCCAACCTGGGGCACTATGGAGATATAAACCTTTTAGATCCAGATACTAGTCAAAGGCAAGTAGATAGTACATTGGCAGCGTACTCAAAAATGATGTCGCCACTTAAAAACTCTTCAGATGGATTAACTAGTCTTAACCAAAGCAACTCCACCTTGGTAGCACTCCCAGAGGGTAGGCAGGAATTGTCAGATGGGCAGGTTAAGACAGGCATCAGCATGTCCTTACTCACCGTCATTGAAAAATTGAGAGAAAGGACAGACCAAAACGCTTCAGACGATGACATTTTGAAAGAGTTGCAGGACAACGCCCAGTGCCAACCCAACAGCGATACAAGTTTGTCCGGAAACAATGTGGTGGAATACATCCCGAATGCTGAACGACCCTACCGTTGCCGCCTGTGTCACTACACAAGTGGCAACAAGGGCTACATCAAGCAGCACTTACGAGTCCATCGACAGAGACAGCCTTATCAGTGTCCTATCTGCGAGCACATAGCGGACAACAGCAAAGATTTGGAGAGTCACATGATCCACCACTGTAAGACAAGAATATACCAGTGCAAGCAGTGTGAAGAATCCTTCCATTATAAG
Seq C2 exon
AGTCAATTGAGGAACCATGAGAGAGAACAGCACAGTCTTCCAGATACCTTGTCAATAGCAACTTCTAATGAGCCAAGAATTTCCAGTGATACAGCTGATGGAAAATGTGTCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.340 C2=0.694
Domain overlap (PFAM):
C1:
NA
A:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.2),PF0009621=zf-C2H2=PU(50.0=1.7)
C2:
PF0009621=zf-C2H2=PD(41.7=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)