GgaEX7008144 @ galGal4
Exon Skipping
Gene
ENSGALG00000004532 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9235578-9241499:+
Coord C1 exon
chr11:9235578-9235716
Coord A exon
chr11:9238051-9240164
Coord C2 exon
chr11:9241394-9241499
Length
2114 bp
Sequences
Splice sites
3' ss Seq
TTTTAATGTTTTTCTCCTAGATA
3' ss Score
9.34
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGAAACAAGTAGGGCCAATATTTGCTTGTTCAGAATTATTGCTTCGAGGAGATGTTCCAAACACGAATGCTGCAGTGTGAGTCTGAGTTTCCCAGCACTTACTGAACTTTTCAATTATAAGGAACTCCAGCCCAAACA
Seq A exon
ATATTATGGAAGAAGGAAGTAGTGTTGCAGTATTGATGCCAAGTATTGGAGAACAGGAGGCTGTACTGATCTCTGAAACAGTCATTGGCCCAACACTACAAAACAGTGAAGATCAGAGAAAATGTAAAACTGATCCATTAATCCACGTTATCCAGAAGCTAAGCAAAATAGTTGAAAGTGAGAAATCACAAAGATGCCTTTTAATAGGGAAAAAACGTTCCCATCCTGACGCTTCTGCACAGTCCTTTGATACAGATAATCTTTGTGAAATCCCAGCTAAAGCAATTGAGCTATCTGTTATTGCTGCTAAAAAGACTGAAGAGTTACAAGCTGACTATTTTGTGACTGAATGTCTTCCACAAAGCAAAAAGAAGGTGACATGCTACCAGTGCAGTCTATGTAAATTTCTATCACCTTCTCTCTTAACGCTACAAGAACATATAAAACAACACGGGCAGAAAAACGAAGTGATACTGATGTGCTCAGAATGTCATTTTACTTCTAAAAACCAAGAAGAACTTGAATCTCACTTCAAAAATCACCATGAGAATGGAGGTAAAAATAGCATCCAGACAAACGTGCAGCAGTGTGTAAATGCATCAAGCTCATTTTTGCAAGGGACGGTGGAAGGAAATGTCAAATCAGGGGCTGGAAATACAGAATGTAAAGATACCACTCAGTCTAGTCACATATCTGAAATGGGTAGGAGGAAATGGTATACCTACGAGCAGTACGGCATGTACCGATGTTTAATTTGTCGGTACACCTGTGGTCAGCAACGAATGTTGAAAACGCACGCTTGGAAACATGCAGGTGAAGTTAACTGTTCTTATCCTATCTTTGAGGAAGAAAATGAAATTGCCAACTTGTCGGAGACAGCAGTAACTCGTACACCTCATAGCATGGACACAGTTGTTCTTTCTTTGGAAAACAATGAACTAGATATCCATAGTGAACCTACTCTTCAGCTTCAGATTTGCAATTCTGAGCAACTGTCATGCAAATCACCAGTAGGAACAAATGTAAAAGAGGATGAGATGATAAATCAGTCTGTAGTGCATTCTCCTACTACAGAGGACACTGTTTCAGATACAGAACAGGATAATTTGATAACTGATAGCCTACTTTCATCAGCACAGAAAATCATTAATTGTAGCCCAAATAAAGAGGGTCACGTTAACGTAATAGTCGAGCGTTTGCCAGGTGCTGAGGAAAGTGTCCTACAAAAGCCTTTCTTGATGAACACTGACATAGAAACAGAAAAAAAATTTATCTCGGAGGAATCCAATGCTACCTCTGAAGAACCCAATGGAGTGTATCATTCAGGTGAAATCCAAGAAGTAATAATAGGATGGAATAATACTGAGAAAAAAGATAACGAATTAAGCTCTATAAAAAATGTAACAACTGATGAAAATGCACCTCCTGTACGAAGAAGGACAAATTCAGAGTCTTTACGACTACACTCACTAGCTGCAGAAGCTCTTGTTACAATGCCTATCAGAGCTGCAGAGCTAACAAAGTCTAGCTTGAGGACTTTGACTGGGGAAGACTCTGTGGATGCAGATACAGGGCAGGGAGAGGCTGATGGGCCAGGCATGGCTCGTTCTAGAGTGGCATCCTCGCTTAAGAATCCGTCAGAGGAGTTTACTGGCTTAAACCAAAGTGAATGTGCAATAGTTGAGATACAGAAAGAAAGGCCAGAGTTATCAGAAGCACCAATTAAAATGGGCATCAGTATGTCTCTACTCACTGTCATTGAAAAACTGAAGGAAAGGACAGATCAAAATGCTTCTGATGATGACATTTTGAAAGAATTACAAGACAACGCACAATGCCAAAATGCAAATGATGCAAATATTCCAGGAAGTAACCTAGTAGAATATATACCCAATGTAGACCGACCCTACCGCTGTCGCCTCTGCCACTACAGCAGCGGTAATAAGGGCTACATAAAACAGCATTTGAGAGTCCATCGTCAGAGGCAGCCCTATCAGTGTCCTATCTGTGAACACATTGCTGACAATAGTAAGGATTTAGAGAGCCACATGATCAACCACTGCAAAACAAGAATGTATCAGTGCAAGCAGTGTGAAGAATCTTTTCATTATAAG
Seq C2 exon
AGCCAACTGCGAAATCATGAGAGAGAGCAACACGGTCTTCCAGATATCTTTTCAACATCCACGTCCAACAAACTAACAGTTTCCAGTGAAGTAGATGAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.320 C2=0.556
Domain overlap (PFAM):
C1:
NA
A:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4),PF0009621=zf-C2H2=PU(50.0=1.7)
C2:
PF0009621=zf-C2H2=PD(41.7=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]