MmuEX0053589 @ mm9

Exon Skipping

Gene

ENSMUSG00000048280 | Zfp738

Description

zinc finger protein 738 [Source:MGI Symbol;Acc:MGI:3040706]

Coordinates

chr13:67768374-67774625:-

Coord C1 exon

chr13:67774499-67774625

Coord A exon

chr13:67773935-67774030

Coord C2 exon

chr13:67768374-67772548

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTCCTTTTCCCACAAACAGGTC

3' ss Score

11.31

5' ss Seq

CGGGTGTGT

5' ss Score

5.31

Exon sequences

Seq C1 exon

GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTTGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCAACCTTGTGTTCCTGG

Seq A exon

GTCTTGCTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCGGCTACCTCTATGCTCCCGG

Seq C2 exon

AAAGAAAATGCTATAAGTGCAAAGAGTGTGGCAAAGTCTCTGAGTGGACAAAAGTGTTTCAAAATCACCAGATGCTTGATTTAGGAATGAATTACTACAAGTGTGAAGAATGTGCCAAGTCCTTCCATAGTCCATCATTAAGTTCTGAAGAGAACAGAATTCATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAGTGTGTGGCAAGGCCTTCCAACATCCATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGAAAAGCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCATACAGGAGAGAAACCATACAAGTGTACAGTATGTGGCAAAGCCTTCCATTATCCATCAATATTTTCTAAACACAAGCGAATTCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000048280_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.035 C2=0.004

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=97.6)

A:

PF0135222=KRAB=PD(0.1=0.0),PF143531=CpXC=PU(0.1=0.0)

C2:

PF079757=C1_4=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.7),PF0172213=BolA=WD(100=9.5),PF0013017=C1_1=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.5)

Main Inclusion Isoform:

ENSMUSP00000121275