MmuEX0053595 @ mm9
Exon Skipping
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102035002-102038351:+
Coord C1 exon
chr15:102035002-102035314
Coord A exon
chr15:102035660-102035736
Coord C2 exon
chr15:102038202-102038351
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTTCCCAACAGGAA
3' ss Score
13.08
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
GTTTCTGGAACAGACCTAGAGCTTCACCAAGAGAATTCAACTTGGAAACCAAGACTGGTAGACTCTCGTTTCTTCCGACAAGAGGCAGAAGTCAGAGAGAGACTGCGGATTCTTGGGACACCTGTTTTCCTTTTGGAGGACACCGAGTTCTTTGAGAAGACAGTTCAATATGGCAAAGGAACTGAAAGAACGGGGAGGAGCCGTTACTGTGATTTGGTGACGGTTCTTCAGACAACCAGTGTCTTAAGGAAAACTGGGACAGAGAACTTCTGAACTTTTTGGGTTCGTTAAGTGAGAAGTCAGCATGGCTCAG
Seq A exon
GAATTTTATTGAGCTCCTGTTACATGCACGGCATTGTGTTTGGAATACAAAGATGAATAAGATTGCCCTTGTCCCCA
Seq C2 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCTGAAAACGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.718
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154431=DUF4630=FE(52.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGAAAGAACGGGGAGG
R:
CACCTGCTAGGCCTTCACAAG
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types