MmuALTD0016227-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102035211-102035736:+
Coord C1 exon
chr15:102035211-102035314
Coord A exon
NA
Coord C2 exon
chr15:102035660-102035736
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTGTTTTTTTTTCCCAACAGGAA
3' ss Score
13.08
Exon sequences
Seq C1 exon
TGATTTGGTGACGGTTCTTCAGACAACCAGTGTCTTAAGGAAAACTGGGACAGAGAACTTCTGAACTTTTTGGGTTCGTTAAGTGAGAAGTCAGCATGGCTCAG
Seq A exon
NA
Seq C2 exon
GAATTTTATTGAGCTCCTGTTACATGCACGGCATTGTGTTTGGAATACAAAGATGAATAAGATTGCCCTTGTCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897-1-4,2-4,3-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154431=DUF4630=PU(2.1=66.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTGGTGACGGTTCTTCAGA
R:
TGGGGACAAGGGCAATCTTAT
Band lengths:
181-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: