HsaALTD0007506-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:27465]
Coordinates
chr12:53575461-53578824:+
Coord C1 exon
chr12:53575461-53575776
Coord A exon
NA
Coord C2 exon
chr12:53578675-53578824
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTTCTGAAACAGATCGTGAGCTTCATCAAGAGAATTCAACTGGAAAACCAAGACTGGTAGACTCTCTTTTTCTTCAGACAATAGGCAGGAGCCAGGCAGAGTCCAGGGATTCTTGGAACACCTATCTTTTCTTCGGAGGACACTAAGTTCTATTTGAAGACAAAGTTCAATATGGCAACAGGACTGATGGGACACGAAGGAGTCGCTACCGTGATTTGGTGACAGTTCTTCAAAACGACAGTGTCTCAAGGAAAGGTGGACCTAGGAACTCCTGAACTTTTGGGTTGCCTTAAGTGAGAAATCAGCATGGCTCAG
Seq A exon
NA
Seq C2 exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF154431=DUF4630=PU(1.9=66.7)
A:
NA
C2:
PF154431=DUF4630=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGAGTCCAGGGATTCT
R:
CACCTGCTAGGCCTTCACAAG
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)