HsaEX0074291 @ hg19
Exon Skipping
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:27465]
Coordinates
chr12:53575461-53579260:+
Coord C1 exon
chr12:53575461-53575776
Coord A exon
chr12:53578675-53578824
Coord C2 exon
chr12:53579171-53579260
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTTCTGAAACAGATCGTGAGCTTCATCAAGAGAATTCAACTGGAAAACCAAGACTGGTAGACTCTCTTTTTCTTCAGACAATAGGCAGGAGCCAGGCAGAGTCCAGGGATTCTTGGAACACCTATCTTTTCTTCGGAGGACACTAAGTTCTATTTGAAGACAAAGTTCAATATGGCAACAGGACTGATGGGACACGAAGGAGTCGCTACCGTGATTTGGTGACAGTTCTTCAAAACGACAGTGTCTCAAGGAAAGGTGGACCTAGGAACTCCTGAACTTTTGGGTTGCCTTAAGTGAGAAATCAGCATGGCTCAG
Seq A exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
Seq C2 exon
GGTCACCGAAAAGACAGTGATAAGTCCCGGAGCCGCAAAGATGATGACAGCTTGTCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.480 C2=0.767
Domain overlap (PFAM):
C1:
PF154431=DUF4630=PU(1.9=66.7)
A:
PF154431=DUF4630=FE(47.1=100)
C2:
PF154431=DUF4630=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGAGTCCAGGGATTCT
R:
GGCTCCGGGACTTATCACTGT
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)