RnoEX0102164 @ rn6
Exon Skipping
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143810892-143814468:+
Coord C1 exon
chr7:143810892-143811209
Coord A exon
chr7:143813886-143814035
Coord C2 exon
chr7:143814343-143814468
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCTGGACCAGACCTAGAGCTTCACCAAGAGAATTCGACTTGGAAACCAAGACTGGTAGACTCTCGTTTCTTCCGGCAAGAAGCAGAAGTCAGAGAGAGACTACGGATTTTTGGGACACCTGTTTTCCTTTTGGAGGACGCTAAGTTCTTTGGGAAGACAAGACAGTTCAGTATGGCAACAGAACTGAAAGAACAGGAGGGAGAGCCATTACTGTGATTTGGTGACAGTTCTTCAAACAACAGTGTCCTAAGGAAAATTGGATAAAGAATTTCTGAACTTGTTTTGGGTTCGTTAAGTGAGGAGTCAGCATGGCTCAG
Seq A exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGTCAGATTGCCAGCAAGCAGGCCGAAAATGGCGAGCGGGCAGGTAGCCCCGATGTGCTGAGGTGTTCCAGTCAG
Seq C2 exon
ATGGACTGTAAGCCTAGATTTGATTTGTCTTCAAAGGGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGATGATGACACCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.393 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACGCTAAGTTCTTTGGG
R:
ATCACTGTCTTTTCGGTGGCC
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]