RnoALTA0046035-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143813886-143814468:+
Coord C1 exon
chr7:143813886-143814035
Coord A exon
NA
Coord C2 exon
chr7:143814379-143814468
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GATTTGATTTGTCTTCAAAGGGC
3' ss Score
6.86
Exon sequences
Seq C1 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGTCAGATTGCCAGCAAGCAGGCCGAAAATGGCGAGCGGGCAGGTAGCCCCGATGTGCTGAGGTGTTCCAGTCAG
Seq A exon
NA
Seq C2 exon
GGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGATGATGACACCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192-5-8,5-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAGTCAGATTGCCAGC
R:
GCGGTTGCGGGATTTATCACT
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]