RnoALTA0046035-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143813886-143814468:+
Coord C1 exon
chr7:143813886-143814035
Coord A exon
chr7:143814343-143814378
Coord C2 exon
chr7:143814379-143814468
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTCACATTTTATATTCCCAGATG
3' ss Score
8.12
Exon sequences
Seq C1 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGTCAGATTGCCAGCAAGCAGGCCGAAAATGGCGAGCGGGCAGGTAGCCCCGATGTGCTGAGGTGTTCCAGTCAG
Seq A exon
ATGGACTGTAAGCCTAGATTTGATTTGTCTTCAAAG
Seq C2 exon
GGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGATGATGACACCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAGTCAGATTGCCAGC
R:
GCGGTTGCGGGATTTATCACT
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]