RnoINT0169277 @ rn6
Intron Retention
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143813886-143814468:+
Coord C1 exon
chr7:143813886-143814035
Coord A exon
chr7:143814036-143814342
Coord C2 exon
chr7:143814343-143814468
Length
307 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTCACATTTTATATTCCCAGATG
3' ss Score
8.12
Exon sequences
Seq C1 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGTCAGATTGCCAGCAAGCAGGCCGAAAATGGCGAGCGGGCAGGTAGCCCCGATGTGCTGAGGTGTTCCAGTCAG
Seq A exon
GTACAGCACTTGAGTCCATTGTGGTGCTCGGGGATCGGGTGGCCCAACCCTGCCTGGAGGCACTAGGCTGTGGCTCCTGTGGCTCTGCCTTGATTTTTCTGTTTAGGGAAGTGGGGAACTAGGATCCAGCTGAGAAGGAAGGAGTGCGGGTGTCTGGAGAGCTGAGGAAGGTCCCTGTGGTACCTGCAGACTCTTAGACCAGGAGAGGGAAAGAGGAAGTAGATGTGTGGAGAGGAAGCAGTGGTTTATATCCTTTGCAAACTGTTTATCAAGAGACTTTATTTGGTTTCACATTTTATATTCCCAG
Seq C2 exon
ATGGACTGTAAGCCTAGATTTGATTTGTCTTCAAAGGGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGATGATGACACCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192:ENSRNOT00000016240:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTCTTCTGGCTTGTGAA
R:
CCTCAGCCAAGGTGTCATCAT
Band lengths:
247-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]