BtaINT0166026 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046481 | ZNF740
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MZB2]
Coordinates
chr5:26981479-26982054:-
Coord C1 exon
chr5:26981905-26982054
Coord A exon
chr5:26981569-26981904
Coord C2 exon
chr5:26981479-26981568
Length
336 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GATTTGATTTGTATTTAAAGGGC
3' ss Score
5.42
Exon sequences
Seq C1 exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGAGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
Seq A exon
GTACAGCACTTGAGCCCATTGCGGCACCTGGGGGTCGGGTGGCCCAAGCTCTCTGCCAGGAGGTGCCCAGCTCTGAGTCCTCAGTGCTTTTGTTTAGGGAAGTGGGAAAGGGGATACAGCTGGGCCATGAGTATGGGTATTTTAGAGGGTACAGGAAAGGAAGGTCTTTCCTGTACAACAGCTCGTTAAAACCAAGGTACTTGGAGAGGAGATGGATGCGTACTTTCTCTAAACCTCTGGGGCAGGTGATTCACAAGTTGTCTCAAAGCACCTTTTTGGCTTCCTGTCTTGTGTTCTCAGATTGACTGTGCATTTAGATTTGATTTGTATTTAAAG
Seq C2 exon
GGCCACCGAAAAGACAGTGATAAATCCCGGAGCCGCAAAGACGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046481:ENSBTAT00000065154:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.733
Domain overlap (PFAM):
C1:
PF154431=DUF4630=FE(46.7=100)
A:
NA
C2:
PF154431=DUF4630=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTCTCCTGGCTTGTGAA
R:
AGCCAAGCTGTCATCGTCTTT
Band lengths:
207-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]