BtaALTD0024893-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000046481 | ZNF740
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MZB2]
Coordinates
chr5:26981479-26984726:-
Coord C1 exon
chr5:26984414-26984726
Coord A exon
chr5:26984214-26984413
Coord C2 exon
chr5:26981479-26981568
Length
200 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
GATTTGATTTGTATTTAAAGGGC
3' ss Score
5.42
Exon sequences
Seq C1 exon
GTTTCTGAAACAAATCGTGAATTTCATTCAGAGAATTCAGCTGGAAAACTGAGACTGGCAGCCTTTTTCTTCAGACAATAGGCAGGAGCCGAGCAGAGACCAGGGATTCTTGGAACATCTATCTTTACTTTGGAGGACACTAAATTCTGTTTGAAGACAAAGGCATTTCAGTATGGCAGCAGGACTGAAGGGACACGAAAGAGTTGTTACAGTGATTTGGTGACAGTTCTTCAAACAACAGTGTCTTAAGGAAAGGTGGAGCAAGAAACTCGAACTTTTGAGTTGCATTAAGTGAGAAATCAGCATGGCTCAG
Seq A exon
GTAAAAAGCTCTAGAGTCCTCCTCCTTCAAGATCACTGGGAAGCGTGTTTGCAGTTTCACTCTTGAATGCTGCCTTAGTCAACATATTGACCAACCCAGTGAGCCAAGCTCTGTATTAAACACCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAG
Seq C2 exon
GGCCACCGAAAAGACAGTGATAAATCCCGGAGCCGCAAAGACGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046481-2-6,3-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.733
Domain overlap (PFAM):
C1:
PF154431=DUF4630=PU(1.9=66.7)
A:
NA
C2:
PF154431=DUF4630=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAACTGAGACTGGCAGC
R:
ATCACTGTCTTTTCGGTGGCC
Band lengths:
293-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development