MmuALTD0016227-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102204780-102205305:+
Coord C1 exon
chr15:102204780-102204883
Coord A exon
chr15:102204884-102205086
Coord C2 exon
chr15:102205229-102205305
Length
203 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TTGTTTTTTTTTCCCAACAGGAA
3' ss Score
13.08
Exon sequences
Seq C1 exon
TGATTTGGTGACGGTTCTTCAGACAACCAGTGTCTTAAGGAAAACTGGGACAGAGAACTTCTGAACTTTTTGGGTTCGTTAAGTGAGAAGTCAGCATGGCTCAG
Seq A exon
GTAAAAAGCTCTCGAGTCCTCCTTCAAGACCGTTCACTGGGAAGCCTCTTTGCAGTGTCACCCTTGAATTCTGCCTTAGCCAACAGTATTGACCATCCCCAGTGAGCCGAGCTCTGTATTAAGCGCCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAG
Seq C2 exon
GAATTTTATTGAGCTCCTGTTACATGCACGGCATTGTGTTTGGAATACAAAGATGAATAAGATTGCCCTTGTCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897-2-7,3-7,4-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTGGTGACGGTTCTTCAGA
R:
TGGGGACAAGGGCAATCTTAT
Band lengths:
181-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types