HsaALTD0007506-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
chr12:53181677-53185040:+
Coord C1 exon
chr12:53181677-53181992
Coord A exon
chr12:53181993-53182190
Coord C2 exon
chr12:53184891-53185040
Length
198 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTTCTGAAACAGATCGTGAGCTTCATCAAGAGAATTCAACTGGAAAACCAAGACTGGTAGACTCTCTTTTTCTTCAGACAATAGGCAGGAGCCAGGCAGAGTCCAGGGATTCTTGGAACACCTATCTTTTCTTCGGAGGACACTAAGTTCTATTTGAAGACAAAGTTCAATATGGCAACAGGACTGATGGGACACGAAGGAGTCGCTACCGTGATTTGGTGACAGTTCTTCAAAACGACAGTGTCTCAAGGAAAGGTGGACCTAGGAACTCCTGAACTTTTGGGTTGCCTTAAGTGAGAAATCAGCATGGCTCAG
Seq A exon
GTAAAAAGCTCTAGAGTCCTCCTCCAAGATAACTGGGAAGCCTGTTTGCAGTTTCACTCTTGAATGCTGCCTTAGTCAACATATTGACCAACCCCAGTGATCCAAGCTCTGTATTAAGCACCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAG
Seq C2 exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651-3-6,4-6,5-6,6-6-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGAGTCCAGGGATTCT
R:
CACCTGCTAGGCCTTCACAAG
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains