HsaINT0188270 @ hg38
Intron Retention
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
chr12:53181677-53185040:+
Coord C1 exon
chr12:53181677-53182190
Coord A exon
chr12:53182191-53184890
Coord C2 exon
chr12:53184891-53185040
Length
2700 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTTCTGAAACAGATCGTGAGCTTCATCAAGAGAATTCAACTGGAAAACCAAGACTGGTAGACTCTCTTTTTCTTCAGACAATAGGCAGGAGCCAGGCAGAGTCCAGGGATTCTTGGAACACCTATCTTTTCTTCGGAGGACACTAAGTTCTATTTGAAGACAAAGTTCAATATGGCAACAGGACTGATGGGACACGAAGGAGTCGCTACCGTGATTTGGTGACAGTTCTTCAAAACGACAGTGTCTCAAGGAAAGGTGGACCTAGGAACTCCTGAACTTTTGGGTTGCCTTAAGTGAGAAATCAGCATGGCTCAGGTAAAAAGCTCTAGAGTCCTCCTCCAAGATAACTGGGAAGCCTGTTTGCAGTTTCACTCTTGAATGCTGCCTTAGTCAACATATTGACCAACCCCAGTGATCCAAGCTCTGTATTAAGCACCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAG
Seq A exon
GTAGGCTATACTGCATCACAGGCACTGATGGGACATTTGCAAAGCAACGTGTACTCAGTTTACATTTGGTACATTAAGTGCTGAGGGGTGTAAGGGAGTGAATAGTACGGTGAATGCTTCTTTTGTTTTTTTCCAACAGGAATTTATTGAGTTCCTGTTGCATGCAAGGCATTGTGCTGGGAATACAAAGATGAATACGATTGTCCTTGTCCCCAGTGAGCTTCCAGGCTAGTTGGGGTCGGGAGAGGGATGGAAAGCCATTTATTTTTATATTCACAATGCCTTGTATAGTGGCTGGCTAGTAGTAGAGACTCTGAATCTGTTGATTGAGGAATGTGCAATAATAGGGGTATGTACATAGGAGAGAACAGTACTTCTGCTTGGATAGAAAAAGAAGATGGAGGTTGAAAGATGCATAGGATTTTGCTAAACAAGCGAGAAGGGTGTTTGGACAAAAGGAACAGCATGGGCAGGAGCTTAGAGTCATGGGAAAATGTGATGAGGTTCCGAGTACTGCAGGTTGTTTGATAGTTACGGAGTAAGGGATTTAAATGGGGATAGTTATGGAGGTAGTATTGACAGTGATAGGTGAGGAAGTTGTTCCCTGCAGTAAGCAGAGTGTAACCCAAAGGCCTTTTATGCCTCGCTAAGTTAAGCAGCAGAGTAGCATCAGATCAGTGTTATGTAGAAGGTCATTATTGTGGAGGTAGAGGATGGACTGGAGAGACAGAATGAGCAGATAGGCTGTTGTAGTCATCTGAGTAGAATAGCTATGTGCACACATCTCCAGAGCTTCTCCCAGCTTGCTTCTAGGGAACCTCCCTACCAGTCTCACCAGGATGGCAGTCTGATTGTAGTATAATTGGCTTTCCTCCAGCTGCTTCTGAATGCACAGCTTCCTCCTTTCCATATAGAATAGGAGCCTGTCAGTTTCTTCTTCCTTTGTGTTTTGCAACCCACTTCTCAGCATTGTATTCAGTCTTCTGAGAATGCTGCCTTCCACTAAGGACTGAACTTTGTGCTAGACACTGTTAAGCGTTTTACGTCTTAGTTTACTTTTCATCAACCCTGTAAGGATAAGCATTATGACAGGCATTTTTCATGTAAGGAAACTAAGGCTTGCAAAGGTGGAATAACTTGCCCAAGATTATAGAGTGCAAACAGCTGAGCTAAGATTTTAACTCTGGATCTTTCACTCCAAAGTCCCAGAAGGTGGAGGGAGGGGTCCCAGAACGTACTGATCATCTAAAAGGAATTTCTTCATAAATTTGTGAGTTTGCTGACCAACGATTTCTTAAAATTTTTTTTTTCAGTAAGAAAAGTATTTTCTTTAATGCCGGCTAACCGAAGTCAGTTTGAAGAATGTAGCAGTTTTCTGGAAATTTACTTAAACATACCTTACTTAAGTAATTGTTTAAATTATATATGGAGCAAGGAATGTGAAAAAAAATGTGATCATACAAGCACACATATAAATGGCCTAAGAGGTCAAGAGAAATGCTGAACTCCAAAAATCATATCAGTTGCAATTGGTAAATACTTAGGGAGTTTAAAATCTAAAGGGAGAAATAGCCTGTAGTCCCAGGACCTTAGGAGACTGAGGCTGGAGGATTGTTTAAGCTCAGGAGTTCCACACCAGCCTAGGCAACATGGTGAAACCCCGTCTCTATAAATACAAAAAAAAATAGCCGGGTGTGGTGGCATTCTCCTGAAGTCCCAGTTACTCAGGAGGTAGAGGTAGAAGGATCGCTTAAGCCAGGGAGGTCAAGAGTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGACACCCTGTCTCAACCAACAAGCAAAAAATGAAACAAACCGATAGAAAATACAGTTGGCACCAGCAAGATCTGCCAATCAAAAGTGGGCTCTGAAGCTAAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCTCTGAAGCTAAGGGGTGTGTGTGTGTGTGTGTGTGTGTGAGTGACGGAGGGATTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATTTCGGCTCACTGCAGCCTCCGCCTCCCGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACCGCAGGTGTGTGCCACCACACCTGGCTAATTCTTGTATTTTTAGTATAGACAAGGTTTCACCTATTGTCCAGGCTTGTCTCGAACTCCTGACTTCGTGATCCGCCCGCCTCATTCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACTGCACTCGGCCCAGCTGAGGGCTGTTGAGGGAGGAAGGAGGAAGGTCCTGAAGGAATCTCCTGTGTCAGTGGGTTAGCAAGATGGAACCTCATACCCACTCACAGTTAAGGCCTAGAAATACCTTCAAAGAAATATGTAGCCACACACTGCCTAGTGCTGATGACAAAGGTGTCAGTAATACTTGATTATTTACTTGATCTATATTTAAATGCTGAAGGATGACAAGATAAGTCGTTCCTGGTGAGATGAGTTAGGGAGGACTCTTGAAGGAAGCAAGGCTTTGGCAGTGAGGAGGGACATTCCCTGGAGAGAAGCAGTTTGTAGCAGGGTGTAAAAGGTAGTTCTATAGAGGATGGCAGTCTGTTTTTGCCCTGCCCTGCCAGGTGACCTGACACCTCATCTCCTTTCAACTTAG
Seq C2 exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651:ENST00000552593:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains