MmuINT1035728 @ mm10
Intron Retention
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102205229-102207920:+
Coord C1 exon
chr15:102205229-102205305
Coord A exon
chr15:102205306-102207770
Coord C2 exon
chr15:102207771-102207920
Length
2465 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GAATTTTATTGAGCTCCTGTTACATGCACGGCATTGTGTTTGGAATACAAAGATGAATAAGATTGCCCTTGTCCCCA
Seq A exon
GTAAGCTCCCAGGCTAGTTGGGGGGAGGGGGAGGGATGACGGCAAGACAGTCTGTTATTTATTATTTTTATATTCACGGTGCCCTGCGTGATAGCTGGCTGGTACTAGAGACTCTGAATCAGTTGACTAAAGGAGTTCTCAGTGATAGAAGGATTGTGACTGCGTGGTGGTACCTCTGCCTGGATGGGGGGGGGGGGGGGGAAGGAAGCCTGCAGGTAGCATAGGATTTTGCTAGAGAAGTCAACAGAGAAGGGCACTCAGACAGAGGGAGGGGCTTAGAGGGATGGGACACCACTGGATGGTTTGGTGGGTAGTTAAGGAGCAAAGGATTACAAATGGGGGATCATTAGATGGGGTTAGGTAACGAAGGATGGGGGGTTACTTCCTAGAGAAGTCAGTGGAATGTGGTCCAAGGGCTTTTTGTGCTTTTCCTAAGGAGTTAGACATTATTATCCAGGGAGTGGGGAGTCCCCGAAGAATGTTAAACTCCAAAGTAATGTGGTCCAGAAGATAGCTGTTTTTGTGAAGGTGGCAGATGGTTTGGAAGGACCAGAGGGACGGAGGGACCGTTGTAGTCTTCTGAATGGAGAGCCGTGCGCTTCTCTGAGCTTTCTCTGAGGAAACCAGTCTCACCAGGACGGCAGCCTGAGTGTAGAGGGGTTGGCTTTCTTCCAAGTGCTGCAGCATGCCTCTGGGTCTCTTCCTTTGTCTGTCTGCAGCGTACTCCACAGCATCGTGCTCACTGTTCTGAAAGGGTTGGTTGCTTCTGCCAAGCATTGACTTTGTGCTTGACACTAAGCATTTTACATCCCTCTCTCATTCTCCTTGGCCCTGTGAGGGTAGGCACTCTGATTGGTGTTTCACATTGGAGCGAAACAAGGCTTCAAAGATGGAGAGACTTGGCCAGAATTGCACAGCCCAAACAGCAAAACTAAGATTTTTAACTTCAGAGTTCATGGAAGTGAGAGAACGGATCCGAAGGCACACTGATCATCCAAGAGAGTAGTTTTACTAATCTGGGAGTTTGTTGACCGACTAGTTCTTTAAAAGACTTTCTTGAGTAAGAGCAATGCATACTCTGGAGTGCCGGCTCGATAGTAGGTTAGAGGATTGTGGTTGTAAAAGGCGGTTGGTTGTGTCTTAAGGCACCCCTGTTGAATTAACTTTTTTAACTTTATTTAGCACCTAAAAATGGCCTAAAGGGGGTGGGGGTAGCCAAGTGTGGTGCCACATACTAATCTCAGCACTCAGGAGGCAAAGGCAGGTGGATCTCTTGAGTTCGAGGCCAGTCTGTACTATAGAGTGAGTTTCAGGACAACCAGAGCTACACAGAGGAACCTTATCTTGAAAAACCTAAAAAAAAAAAAATGGCCAAAGTGGTTCAAAGAAACTGTATATTCGACAGGCATGGTGGTGCACGCCTTTGATTCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAGAAAAAAAAAAAAGAAAAAAGAAAGAAAAGAAAAGAAACTGTATACTCAATTCCAGAATCTAGAGATTTTATTTGCTGTAGGTGACAGCACTTAAGGAATTTAAAATCTAAAGTGAGAAATAGCCTAAAAGCAAATGTAGTTGGCGCCAGCAAGTCTACTTGTCTGAAGTAGGCTTTGAATTCAAGCACTGCTGTGGCCTGGCACTCACTGTTTAGTAAGCCCTTCCAGAGGACCCATATCAGTCCCTCACAGCTGACTACAGCTCCAGGAGATCTGATGCCCTCTCCTGTTCTCCCTGGGCACCTTACCCACATGGGGCATGGACGCATACACACACACACACACACACACACACACACACACACACACACAAAATAATAAAAATAAATCTTACAGAAACAGAAGAGGGGGTCAGCGAGATGGTTCCACAGATGAAGCATCTTGCTGTCAGCCTGATAGCGGGAATTAGATCTCAGAAGCCACATGGTGGAATGATGGACCGACTCCTCAAGTGGTCCTTGGACCTCTTAGTAAAAATAAGAGAGTTTGGAAGGAAGACATTGCCCTAGGAATCTCCGATCTCAGTGGGTCAGGCAGACAGATGTCATACATACCTCCTACAGTTAAAGCTCAGAAATGCCTTAGGTAATGTGTAACCCCACACACTGTTTGGTAACCACGAGGGTTGATGCTGCTTGATTAACTTGATCTGTGCTTCATTGCCTAAGGAATGCCAAGGGGGGAGTAGCTCCTGGTGAGACAGTGAGAAAGGGCTTGAAGGAAGCAAAGTGTGTCTGTGAGGGAGTCTCTTCCCTGAAGAGAAGCGAGTTGTGGCTGGGTGTAGGTGTAGGTCTGTTGAGGATGGCAGCCTGTCTCTCTGCCCTACCCTGCCAGGAGACCTGACACCTCATCTCCTTTCAACTTAG
Seq C2 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCTGAAAACGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897:ENSMUST00000119800:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.728
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types