RnoINT0169276 @ rn6
Intron Retention
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143810892-143814035:+
Coord C1 exon
chr7:143810892-143811209
Coord A exon
chr7:143811210-143813885
Coord C2 exon
chr7:143813886-143814035
Length
2676 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
TTCTGGACCAGACCTAGAGCTTCACCAAGAGAATTCGACTTGGAAACCAAGACTGGTAGACTCTCGTTTCTTCCGGCAAGAAGCAGAAGTCAGAGAGAGACTACGGATTTTTGGGACACCTGTTTTCCTTTTGGAGGACGCTAAGTTCTTTGGGAAGACAAGACAGTTCAGTATGGCAACAGAACTGAAAGAACAGGAGGGAGAGCCATTACTGTGATTTGGTGACAGTTCTTCAAACAACAGTGTCCTAAGGAAAATTGGATAAAGAATTTCTGAACTTGTTTTGGGTTCGTTAAGTGAGGAGTCAGCATGGCTCAG
Seq A exon
GTAAAAAGCTCTAGCGTCCTCCTTCAAGACCGTTCACTGGGAAGCCTGTTTGCAGTGTCACTCTTGAATTCTGCCTTAGTCAACAGTATTGGCCATCCCCAGTGAGCCGAGCTCTGTATTAAGCACCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAGGTAGGCTATATACCACGTCACAGGCGCTGATGGGCCATTGGCAAAGCACCTTGTACCCGGTGTACTCTTGGTACATGAAGTACTCGGGCATAAGGGAGTGAATGGTCTGGTGAATGCTTCATTTGTTTTTTTTCTCCCCAACAGGAATTTTATTGAGCTCCTGTTACATGCAAGGCATTGTGCTTGGAGTACAAAGATGAATAAGATTGTCCTTGTCCCCCAGTAAGCTTCCAGGCTAGTTGGGGGGAGGGGGGATGACGGAAAGACAGTCTGTTATTTACTACTCTTATATTCATGGTGCCCTGCGAGATAGCTGGCTGGTACTAGAGACTCTCCGAGTCTGTTGATTAAAGGAGTTCATGGCGCTAGAAGGGTGTTGCTGCACGCCGGCACTTCTGCCTGGATGGGAAAAAGGAAGAGAAGCTTGCAGTTAGCACAGGATTTTGCTAGATAAACAGGAGGGCATTCAGACAGAGGGACTGTGTGGGCATGGGGTGCCACTGGCGGTCGGTGGGTAGTTAAGGAGCTAAAGGATTAGAGATGGGGGATCGTTAGGCAGGGTAGGTAATGAAGGAGGGGGTTTGTTTTCTGGAGGCGTCAGAGAGACAGGGAAGATAACGAAAGTGGGGAGTTGTTTCCTGGAGAAGTCAGCTGAGTGTGGCCCAAGGGTTTTTTGTGTCTTCCTAAGGAATTAGATGTTACTGTCCAGAGAGTGGGGACCTCCCCCCCCCTCAAAGCAATGTCGTTCAGAAGATAGCTGTCATTGTGAAGGTGGCAGATGGATTGATTGGAAGGACGAGATGACCAGAGGGACAGTTAGAGTCTTCTGAATGGATAGTCGTGCGCTTCTCTGAGCTTTCTTTGAGGAAAACCTCTACCAGTCTCACCAGGATGGCAGCCTGATTATAGTGGGATTGGCTTTCTTCCAAGTGCTGCAGCCTCTGGGCCTTTCCCTTTGTCTGTTTGCAGCTTACTCCACGGCATTCGCTGTGCTTACTGTTCTGAGGAGGTTGCTTCTACCAGGCATTGACTTTGTGCTTGGCACTAAGCATTCTACATCCCTCTCCTGTCCTCCTTGGCCCTGTGAGGGTAGGCACTCTGACAGGTTTTTACGGTTGAGGGAAGCAAGGCTTCAAAGGTGGAGAGGCTTGCCCAGAATTGCAAAGTCCAAACAGCAAAACTAAGATTTTTTTTTAACTTCAAAGTTCATGGAAGTGAAAGAAGAGATTCCCAAGACACATTGATCATCCAAAGGAAAATATTTTTACTAATCCGGGTGTTTGTTGACTAAGAGACTTTCTTGAGTAAGAGAAATCTCAAAGCACCTCTATTGAATTAACTTTCCAAATTTTATTTAGTGCACACTTAGAAATGACCTAAAGGGGGTTGAAGGGAGCCAAGTGTGGTGTCACATACTAATTCCAGCACTCGGGAGGCAGAGGCAGGCGGATCTCTTTAATTTGAGCCCAGCCTGGTCTATAGAGTGACTTTCAAGACAGCCAGAGCTACACAGAGAAACCCTGTCTTGAAAAACCTAAAAATAAAATGAATGGCCAAAGTGAAAAGAAACTATATATTCAACTCCAGAACCTGGAGGTTTTGTTTGCTGTGGCTGACAGCAGTTAGGGAATTTAAAATCTAGGGTGAGAGAGAGCCCAAGAGCAAATGTCGTTGGCACCAACAAGGCCTACCTGTCCAGAGTGTGCTTTGAATCCAGTCAGTGTTGGGGGCCCAGCCCTTCCAAAGGACCCACCTCAGTCCCTCACAGATAACTAACTTCAGCTCCAGAGGATCTGACGCCCTCTTCTGGTCTCCTTGGGCACCTTGCCCATATGTGGCATAAGCACGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACAGACAAAGTAATAAATATTTCAAAAACAGCAGAGGGGTCAGCAAGGTTCTTCATCAGAAGCGGCTTGCTGTCAGTCTGACAACGGGAAGAAGAGAACTGACTCCTCGAATGGTCCTCAGACCTCCACATGCTCCATGACACTGGCCTGCGGGTGCGCACACAAAATAAATAGGCAGAGGTAATAAAGATAAAAGAATTCAGAAGGAAGGCATTGCCCTAGGAATCTCCGATCTCATTGGGTCAGACAGACAGATGTCATACCTACAGTTAAAGCTGGGAAGTGTCTTAGGTCGTATGTCATCCCACGTGCTGTTTGGTGCAGTAACCACAAGTGTTCATGCTGCATGATTAACTTCATCAGTGTTTCATTCGTTGCCTAAGGGGGTGCACAGGGGGAGTAGCTCCTGGTGAGACAGTTAGAAAGGACTTGGAGGAAGCAAGGCGTGGCTGTGAGGGAGTCTTTCCCTGGAGAGAAGCAAGTTGTTGCTGGGTGTAGATGTGGGTCTGTTGAGGATGGCAGCCTGTCTCTGCCCTGCCCCGCCAGGAGACCTGACACCTCATCTCCTTTCAACTTAG
Seq C2 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGTCAGATTGCCAGCAAGCAGGCCGAAAATGGCGAGCGGGCAGGTAGCCCCGATGTGCTGAGGTGTTCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192:ENSRNOT00000016240:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]