RnoEX0102163 @ rn6
Exon Skipping
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143810892-143814035:+
Coord C1 exon
chr7:143810892-143811209
Coord A exon
chr7:143811289-143811412
Coord C2 exon
chr7:143813886-143814035
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGAATTCTGCCTTAGTCA
3' ss Score
4.34
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTCTGGACCAGACCTAGAGCTTCACCAAGAGAATTCGACTTGGAAACCAAGACTGGTAGACTCTCGTTTCTTCCGGCAAGAAGCAGAAGTCAGAGAGAGACTACGGATTTTTGGGACACCTGTTTTCCTTTTGGAGGACGCTAAGTTCTTTGGGAAGACAAGACAGTTCAGTATGGCAACAGAACTGAAAGAACAGGAGGGAGAGCCATTACTGTGATTTGGTGACAGTTCTTCAAACAACAGTGTCCTAAGGAAAATTGGATAAAGAATTTCTGAACTTGTTTTGGGTTCGTTAAGTGAGGAGTCAGCATGGCTCAG
Seq A exon
TCAACAGTATTGGCCATCCCCAGTGAGCCGAGCTCTGTATTAAGCACCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAG
Seq C2 exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGTCAGATTGCCAGCAAGCAGGCCGAAAATGGCGAGCGGGCAGGTAGCCCCGATGTGCTGAGGTGTTCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000016240fB17100
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATTTTTGGGACACCTGT
R:
CACCTGCTAGGCCTTCACAAG
Band lengths:
250-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]