RnoEX0102160 @ rn6
Exon Skipping
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143811289-143813487:+
Coord C1 exon
chr7:143811289-143811412
Coord A exon
chr7:143811557-143811634
Coord C2 exon
chr7:143813339-143813487
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTCTCCCCAACAGGAA
3' ss Score
12.23
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
TCAACAGTATTGGCCATCCCCAGTGAGCCGAGCTCTGTATTAAGCACCAGGGGGAGATCTAGAGGAAGGAAAGGAGACAGGCCACAGCCCCTGCCTTCAGGGAGCTTCCAGTCAAATGAAGGAG
Seq A exon
GAATTTTATTGAGCTCCTGTTACATGCAAGGCATTGTGCTTGGAGTACAAAGATGAATAAGATTGTCCTTGTCCCCCA
Seq C2 exon
CAGAGGGGTCAGCAAGGTTCTTCATCAGAAGCGGCTTGCTGTCAGTCTGACAACGGGAAGAAGAGAACTGACTCCTCGAATGGTCCTCAGACCTCCACATGCTCCATGACACTGGCCTGCGGGTGCGCACACAAAATAAATAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192-'1-3,'1-2,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000016240fB17100
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAGGAGACAGGCCACA
R:
GTGTCATGGAGCATGTGGAGG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]