DreEX0088299 @ danRer10
Exon Skipping
Gene
ENSDARG00000061174 | znf740b
Description
zinc finger protein 740b [Source:ZFIN;Acc:ZDB-GENE-060929-660]
Coordinates
chr23:36306503-36319905:-
Coord C1 exon
chr23:36319165-36319905
Coord A exon
chr23:36312857-36313018
Coord C2 exon
chr23:36306503-36306649
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGTTTGTGCTCAGGCT
3' ss Score
9.35
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AATTTTAAATTCAGGGAAAAAATGTTTACACTTACAAAACTTGCTCTTGTGAATATAAAATTTGTCCAACAAAAAAAAACAAGGTTCATGAAATAAGTCTTATTTTCCTTTTCACATTTATGGAAACCAAAGATAACATTCTTATATGTAAATTCAAAATCTGCCTTCACATAAACTTTTATCAAATCAAGAACATCACATCAAAATGCAATTAAATGAGGGAAATTCCAAAATAATCCTTTACCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTACACGACAATGAAATCAAATCAAAAGGTCGTAGAGTTTGTTCACACCGGAAGTAGCCTGTGATTTGTTGCCTGCTCGGTGATCACGTGACACGCGCTCTCCCCAGAGAACACTTCCGGTAACGTTTCCTGTGTTTGTAAACTGAAGAAAAAAAAAATTGTCCGACAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAG
Seq A exon
GCTGGGTTGCTGGGCTGTGAAGCAGTGCTGTCCAGCATGGCACTCATGCAGGCCGGCTCAATGCCCAGCCATAGGAAGATGAGAGAAAGCAACCACAACCAGGACACACACAGCCAACACACACACATGGTGCTGCCCTCTGGAGTCAGCTGTCCACCACTG
Seq C2 exon
CTCATCCGCAAAGACCGAGAGTTTCACTCGTCCAGGCTTTTGGATGAAAAGGATGTGCAAATCAGCCAGAACGTGCAGCCAAAGAAGAAGAACAGGAAGTCTGGACTTCCCACCAGAATGAGAGAGAAACCCCAGGCATGCATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061174_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.574 C2=0.765
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTCGACCTTTTACACG
R:
AGCCTGGACGAGTGAAACTCT
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]