MmuEX0053596 @ mm9
Exon Skipping
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102035002-102038792:+
Coord C1 exon
chr15:102035002-102035314
Coord A exon
chr15:102038202-102038351
Coord C2 exon
chr15:102038667-102038792
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCCTTTCAACTTAGGCA
3' ss Score
8.01
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTTCTGGAACAGACCTAGAGCTTCACCAAGAGAATTCAACTTGGAAACCAAGACTGGTAGACTCTCGTTTCTTCCGACAAGAGGCAGAAGTCAGAGAGAGACTGCGGATTCTTGGGACACCTGTTTTCCTTTTGGAGGACACCGAGTTCTTTGAGAAGACAGTTCAATATGGCAAAGGAACTGAAAGAACGGGGAGGAGCCGTTACTGTGATTTGGTGACGGTTCTTCAGACAACCAGTGTCTTAAGGAAAACTGGGACAGAGAACTTCTGAACTTTTTGGGTTCGTTAAGTGAGAAGTCAGCATGGCTCAG
Seq A exon
GCAAGTCTTCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCTGAAAACGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCCAGTCAG
Seq C2 exon
ATGGACTGTAAGCCTAGATTTGATTTGTCTTCAAAGGGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGAGGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.718 C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
PF154431=DUF4630=FE(52.1=100)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCGGATTCTTGGGACAC
R:
CGGTGGCCCTTTGAAGACAAA
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: