GgaEX1065609 @ galGal4
Exon Skipping
Gene
ENSGALG00000026752 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
JH375554.1:2427-3056:-
Coord C1 exon
JH375554.1:2984-3056
Coord A exon
JH375554.1:2599-2730
Coord C2 exon
JH375554.1:2427-2513
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCGTCCCCTCCAAATCCAGGCG
3' ss Score
7.8
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
AGCGTTAAGGCCAAAGGATTGTTACAATCCCTTTGTCGAGGACAGACAGACAGACAGACACAAGATGGCTCAG
Seq A exon
GCGAGCCTGCTGGCGTGTGAAGGGCTCTCCGGCGTCTGCCTGGTGCCCACGGTGGCCAGCAAGAAGATGATGCCGAAGCAGAGCTCGAAGCAGGCGGAGGGCAGGGAGAGGGGCAGCAGCCCCGACGTGCTG
Seq C2 exon
GCACTGCGTCAGGATGGGGAGAAGTCCCGCAGCCGAAAGGAGGAGGAGACGGCGGAGGCGTCGCAGCCCAAAAAGTCCATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026752_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.477 C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF058107=NinF=PU(26.7=41.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTAAGGCCAAAGGATTGT
R:
AATGGACTTTTTGGGCTGCGA
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]