MmuEX0053662 @ mm9
Exon Skipping
Gene
ENSMUSG00000074405 | Zfp865
Description
zinc finger protein 865 [Source:MGI Symbol;Acc:MGI:2442656]
Coordinates
chr7:4971978-4984740:+
Coord C1 exon
chr7:4971978-4972257
Coord A exon
chr7:4980593-4981739
Coord C2 exon
chr7:4984365-4984740
Length
1147 bp
Sequences
Splice sites
3' ss Seq
CCCCATCCTCTTCTTCACAGGGT
3' ss Score
9.5
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GCATGCGCACTAGGCCCCGTTCGCCCACCGGAAGCAGCCTTGGCTGTTCCCCTCCCGTGTCTAGTGCCGGCGTAATTTCCCTTACCCGTTCCTCCGCCACCATCCTCCACGCCGGCGCTTGGGGGAACGGGCGCGACTTCCGCTTCCGGGCAGGAGGCGCGGGGCTGGTGGGGAGTTGAGGGGGAAGGGGCGGCACTTCCGGTTGGGCCCTCGGGTCTCCCCGGAGCGGCGGCACCTCCTCCGCCTCCTCAGCCTCCTCCCGGCGGAGACCCCAGCGCCG
Seq A exon
GGTCTCCCTTCTTTCCACCGACCAGAGATGGAGGCAAACCAGGCAGGCAGCGGTGCCGGGGGTGGCGGGAGCAGCGGCATCGGGGGCGAGGACGGGGTCCACTTCCAGAGTTACCCATTTGACTTCCTGGAATTCCTCAACCACCAGCGCTTTGAGCCCATGGAGCTATACGGGGAACACGCCAAGGCAGTGGCAGCCCTGCCCTGTACCCCGGGGCCCCCGCCCCAGCCCCCACCCCAGCCTCCTCCACCCCAATATGACTACCCACCCCAGTCCAGTTTCAAACCCAAGGCGGAGGCTCCTTCCTCATCTTCATCATCATCTTCATCATCATCTTCCTCATCTTCGTCTTCCTCATCCTCTTCCCAAGCCAAGAAGATGGATCCGCCTTTGCCACCCACCTTCGGGGCACCTCCCCCTCCACTCTTTGATGCTGCCTTCCCTGCTCCGCAATGGGGAATAGTCGACCTCTCTGGACACCAGCACCTGTTCGGGAACCTGAAACGTGGTGGGCCCACCCCTGGGCCTGGAGTAGCATCAGGACTGGGCACTCCCACTGGGACCCCAGGGCCACTTACCACACCCTCGCAGACCCCGCCTGGGCCCGCAGTAGGGGCAGCCTGCGACCCAACCAAGGACGACAAGGGCTATTTCCGAAGGCTGAAGTACCTGATGGAGCGACGCTTCCCGTGTGGTGTTTGCCAGAAGTCCTTCAAACAGTCCTCACATCTGGTCCAGCACATGTTAGTGCACTCCGGGGAACGACCATACGAATGCGGCATCTGTGGCCGCACCTACAACCATGTCTCCAGTCTCATCCGCCACCGACGCTGCCACAAGGATGTGCCACCAACACCAACTGGAGGTACGCCACAGCCTGGGCCCGCACTCCCTTCACTGGGCCTCCCGGTATCCACAGCCAGTGCCACAGCCAGCTCTGACCCCGCCGCAGTGTCCTCTGGCCCCTCAGCCACCCCTGCAACGCCTGCCACCTCCACTGATGGGAACACCACCCCTGCTGCCCCACCCGGGGTGGCCATGCCTCCCTCTGCCACTACTGGCGGTGATGGCCCATTTGCCTGCTCCCTCTGCTGGAAGGTCTTCAAGAAGCCTAGCCACCTCCACCAGCACCAGATCATCCACACGG
Seq C2 exon
GTTGAGTGAGGATTTGCCATGTCCCAGGCATTAGCCTGAGTGAAACAGGGAAGTCGCCCTCTCAGGAACTGATTTGAGACCCCGAGACTCCCTTCCATGATGCTCTCAGCCACCATGGAAACACCGGAAGCCTTCTGTCTGCCAAGCCCTGACCTGGGCGCTAGGGAGACTGATGAATTGATCGGACATGACATTCACACTCCAGTAGGCTGGGAGAGCATACCTGAGGAACTTAACACAGTCTGCAGACTTACTGGAGACGGTCTCATGTAGTCTAGGCTAGCTATGGACTTGCTTTGTAGGTACAGATAGGCTTGATTTTCCCCCATTTTTGAGACATGGTCTCTCTATGTAACCCTTGGCTCTCCTGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074405_MULTIEX1-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.505 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
PF047778=Evr1_Alr=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF0009621=zf-C2H2=WD(100=2.2),PF139121=zf-C2H2_6=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF0009621=zf-C2H2=WD(100=2.2),PF139121=zf-C2H2_6=WD(100=2.5),PF139121=zf-C2H2_6=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGCGTAATTTCCCTTAC
R:
GAAGGCTTCCGGTGTTTCCAT
Band lengths:
351-1498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types