Special

MmuINT0179989 @ mm9

Intron Retention

Gene
ENSMUSG00000074405 | Zfp865
Description
zinc finger protein 865 [Source:MGI Symbol;Acc:MGI:2442656]
Coordinates
chr7:4980593-4984825:+
Coord C1 exon
chr7:4980593-4983809
Coord A exon
chr7:4983810-4984364
Coord C2 exon
chr7:4984365-4984825
Length
555 bp
Sequences
Splice sites
5' ss Seq
TCAGTATGC
5' ss Score
2
3' ss Seq
ATCACTCTCTTTTCACCTAGGTT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGTCTCCCTTCTTTCCACCGACCAGAGATGGAGGCAAACCAGGCAGGCAGCGGTGCCGGGGGTGGCGGGAGCAGCGGCATCGGGGGCGAGGACGGGGTCCACTTCCAGAGTTACCCATTTGACTTCCTGGAATTCCTCAACCACCAGCGCTTTGAGCCCATGGAGCTATACGGGGAACACGCCAAGGCAGTGGCAGCCCTGCCCTGTACCCCGGGGCCCCCGCCCCAGCCCCCACCCCAGCCTCCTCCACCCCAATATGACTACCCACCCCAGTCCAGTTTCAAACCCAAGGCGGAGGCTCCTTCCTCATCTTCATCATCATCTTCATCATCATCTTCCTCATCTTCGTCTTCCTCATCCTCTTCCCAAGCCAAGAAGATGGATCCGCCTTTGCCACCCACCTTCGGGGCACCTCCCCCTCCACTCTTTGATGCTGCCTTCCCTGCTCCGCAATGGGGAATAGTCGACCTCTCTGGACACCAGCACCTGTTCGGGAACCTGAAACGTGGTGGGCCCACCCCTGGGCCTGGAGTAGCATCAGGACTGGGCACTCCCACTGGGACCCCAGGGCCACTTACCACACCCTCGCAGACCCCGCCTGGGCCCGCAGTAGGGGCAGCCTGCGACCCAACCAAGGACGACAAGGGCTATTTCCGAAGGCTGAAGTACCTGATGGAGCGACGCTTCCCGTGTGGTGTTTGCCAGAAGTCCTTCAAACAGTCCTCACATCTGGTCCAGCACATGTTAGTGCACTCCGGGGAACGACCATACGAATGCGGCATCTGTGGCCGCACCTACAACCATGTCTCCAGTCTCATCCGCCACCGACGCTGCCACAAGGATGTGCCACCAACACCAACTGGAGGTACGCCACAGCCTGGGCCCGCACTCCCTTCACTGGGCCTCCCGGTATCCACAGCCAGTGCCACAGCCAGCTCTGACCCCGCCGCAGTGTCCTCTGGCCCCTCAGCCACCCCTGCAACGCCTGCCACCTCCACTGATGGGAACACCACCCCTGCTGCCCCACCCGGGGTGGCCATGCCTCCCTCTGCCACTACTGGCGGTGATGGCCCATTTGCCTGCTCCCTCTGCTGGAAGGTCTTCAAGAAGCCTAGCCACCTCCACCAGCACCAGATCATCCACACGGGTGAGAAACCCTTCTCCTGCTCCGTGTGCAGCAAAAGCTTCAACCGGAGGGAGAGCCTCAAACGTCACGTGAAAACGCACTCGGCCGACTTGCTGCGCCTGCCCTGTGGCATCTGTGGCAAGGTCTTCCGCGATGCTTCCTACCTCCTCAAGCACCAGGCAGCCCACGCAGCGGCCGGGACTCCGCGGCCGGTGTACCCCTGCGACCTGTGCGGGAAAACATACTCCGCACCGCAGAGCCTGCTGCGACACAAGGCTGCCCACGCACCACCTGTGGCCACGGAGCCGGCAAAGGACGGGGCTGCCTCGGTCCCACAGCCACCACCTCCCTTCCCCCCAGGTCCTTACCTCCTGCCCGCGGACCCATCCACTACCGACGAGAAAGCCACAGCGGCCGCAGCGGCTGTGGTGTATGGTGCGGTGCCTGTCCCACTTCTCAGCGCGCATCCGCTGCTGCTCGGCGGTGCGGGGAATGGTGGTGCTGGAGGCCCGGGCGCAGGCGGCCCCAGCAAGACGTTCTGCTGTGGCATCTGTGGGCGCGCGTTTGGGCGCCGCGAGACCCTGAAGCGCCACGAGCGCATCCACACCGGCGAGAAGCCCCACCAGTGCCCGGTGTGCGGGAAGCGTTTCCGGGAGTCCTTCCATCTGAGCAAGCACCACGTGGTGCACACCCGAGAGCGGCCCTACAAGTGCGAGTTGTGCGGCAAGGTCTTCGGCTACCCGCAGAGCCTCACACGCCACCGCCAGGTGCATCGGCTCCAATTGCCCTGCGCCCTGGCCGGAGCCACAGGCCTCGCCACCGGCCAGGGGACCACTGGGGCCTGTGGACCCGGAGCTGCAGGCACTTCAGGTGGGCCGGCCGACCTGAGCTATGCCTGCTCAGACTGCGGGGAGCACTTCCCGGATCTCTTCCACGTCATGAGTCACAAGGAAGCTCACATGTCAGAGAAGCCGTATGGCTGTGACGCCTGCGGCAAGACGTTCGGTTTCATCGAGAACCTCATGTGGCACAAGCTGGTTCACCAGGCTGCCCCGGAGCGCCTTCTAGCGCCAACACCCAGTGGCCCCCAGTCTTCTGATGGCGGCAGCAGCGGCGGCGGCACCGATGCATCCAGCGTGCTGGACAACGGACTGGCCGGAGAGGTGGGGACGGCTGTGGCAGCGCTGGCTGGGGTGTCTGGGGGCAGCGAGGATGCGGGTGGGGCGACGGTGGCCGGATCGGGTGGCGGGACCAGTTCAGGCGCTGAGCGCTTCAGCTGTGCCACATGCGGCCAAAGCTTCAAGCATTTCCTAGGCCTGGTGACTCATAAGTATGTGCACCTGGTGCGCCGGACCCTTGGTTGCGGCCTCTGCGGTCAGAGCTTTGCGGGCGCGTACGATCTGCTCCTGCACCGCCGAAGCCACCGGCAGAAACGGGGTTTCCGCTGCCCAGTGTGTGGGAAGCGCTTCTGGGAGGCGGCCCTACTGATGCGCCACCAGCGCTGTCACACAGAGCAGCGGCCCTACCGGTGCGGCGTGTGCGGTAGAGGCTTCCTGCGCTCCTGGTACCTGCGGCAGCACCGCGTGGTGCACACGGGCGAGCGCGCCTTCAAGTGCGGCGTGTGCGCCAAGCACTTCGCGCAGTCTTCTAGCCTAGCGGAGCACCGGCGGCTGCACGCTGTGGCTCGGCCTCAGCGCTGCGGCGCCTGCGGCAAGACCTTCCGCTACCGCTCCAACCTGCTGGAGCATCAGCGGCTGCACCTGGGCGAGCGCGCCTACCGCTGTGAGCACTGCGGCAAGGGCTTCTTCTACCTGAGCTCCGTGTTACGCCATCAGCGAGCCCACGAGCCCCCGCGGCCCGAGCTGCGCTGTCCTGCCTGTCTCAAAGCCTTCAAGGATCCTGGCTACTTCCGGAAGCATCTGGCTGCCCATCAGGGCGGCAGGCCCTTCCGCTGCTCCTCCTGCGGTGAGGGCTTCGCCAACACCTATGGTCTGAAGAAACACCGCCTGATGCACAAGGCTGAGGGTCTTGGGATGCCCGGAACAGGGGGAAGCGCCTTGGCCGGAAAGGATCCCTGACCAGGGTGTTTCA
Seq A exon
GTATGCCACTCCAATCAGATACTCCCTTCTGGACTCTTCCTTTCTGGGGCTGCTGGTCAGACTCTCCCCACCCCTTCTTACTGTCACTCATTCTAAAGACTCCCAGGTGGTCTAGCTTCCTTCCAGCCCCATGCCCTACAAACTGAAGATTAAATTGCTCCAATCCCAGGCCATTCTGGCCCTTCCTTCTTCATCTGTCAGACACTGGACTTGATCCTCTGTCCAGTAGGATCCTCTTTTGTAAACCTCATCTGCCACCCAGCAGCAATTCTGGCTCCAGTGAACTCTGTGGTGGAGATGGGTTTGAACTACTCGCCCTCTCCACATCCTCTGGGATCTGGCTGGACAGTGGACTATGAAGGGTTGGGAGGGCACAGGTGGGGGTCTGGGTGCTCTTGGATGGGGGGTGGGGTGGGCAGGGGACAGACGCGGCTTGTACAGAGCAGAGAACAATAAATGGTATCAACAGGGCCGCTGGGGTCTGTCCTTGCTGTTCCTAGGGGGTTCCACTGACTGGCTGGACACATCACCTCACATCACTCTCTTTTCACCTAG
Seq C2 exon
GTTGAGTGAGGATTTGCCATGTCCCAGGCATTAGCCTGAGTGAAACAGGGAAGTCGCCCTCTCAGGAACTGATTTGAGACCCCGAGACTCCCTTCCATGATGCTCTCAGCCACCATGGAAACACCGGAAGCCTTCTGTCTGCCAAGCCCTGACCTGGGCGCTAGGGAGACTGATGAATTGATCGGACATGACATTCACACTCCAGTAGGCTGGGAGAGCATACCTGAGGAACTTAACACAGTCTGCAGACTTACTGGAGACGGTCTCATGTAGTCTAGGCTAGCTATGGACTTGCTTTGTAGGTACAGATAGGCTTGATTTTCCCCCATTTTTGAGACATGGTCTCTCTATGTAACCCTTGGCTCTCCTGGAATTCTCTGTGGACTAGGCTGGTTTTGAATTTACAGAAATCCACCTGCCTCTCTGCCTCTCTGGTGCTGAGATTAAAGGTGTGCACCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074405-Zfp865:NM_001033383:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.499 A=NA C2=0.500
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF047778=Evr1_Alr=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF0009621=zf-C2H2=WD(100=2.2),PF139121=zf-C2H2_6=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF0009621=zf-C2H2=WD(100=2.2),PF139121=zf-C2H2_6=WD(100=2.5),PF139121=zf-C2H2_6=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000082550





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000075601
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:56128177-56128769 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:62377299-62377789 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr2:283105-283217 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTGCCTGTCTCAAAGCCTTC

				
R: 
GAAGGCTTCCGGTGTTTCCAT

				
Band lengths: 
355-910

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"