MmuINT0179989 @ mm10
Intron Retention
Gene
ENSMUSG00000074405 | Zfp865
Description
zinc finger protein 865 [Source:MGI Symbol;Acc:MGI:2442656]
Coordinates
chr7:5028991-5036768:+
Coord C1 exon
chr7:5028991-5032207
Coord A exon
chr7:5032208-5032762
Coord C2 exon
chr7:5032763-5036768
Length
555 bp
Sequences
Splice sites
5' ss Seq
TCAGTATGC
5' ss Score
2
3' ss Seq
ATCACTCTCTTTTCACCTAGGTT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGTCTCCCTTCTTTCCACCGACCAGAGATGGAGGCAAACCAGGCAGGCAGCGGTGCCGGGGGTGGCGGGAGCAGCGGCATCGGGGGCGAGGACGGGGTCCACTTCCAGAGTTACCCATTTGACTTCCTGGAATTCCTCAACCACCAGCGCTTTGAGCCCATGGAGCTATACGGGGAACACGCCAAGGCAGTGGCAGCCCTGCCCTGTACCCCGGGGCCCCCGCCCCAGCCCCCACCCCAGCCTCCTCCACCCCAATATGACTACCCACCCCAGTCCAGTTTCAAACCCAAGGCGGAGGCTCCTTCCTCATCTTCATCATCATCTTCATCATCATCTTCCTCATCTTCGTCTTCCTCATCCTCTTCCCAAGCCAAGAAGATGGATCCGCCTTTGCCACCCACCTTCGGGGCACCTCCCCCTCCACTCTTTGATGCTGCCTTCCCTGCTCCGCAATGGGGAATAGTCGACCTCTCTGGACACCAGCACCTGTTCGGGAACCTGAAACGTGGTGGGCCCACCCCTGGGCCTGGAGTAGCATCAGGACTGGGCACTCCCACTGGGACCCCAGGGCCACTTACCACACCCTCGCAGACCCCGCCTGGGCCCGCAGTAGGGGCAGCCTGCGACCCAACCAAGGACGACAAGGGCTATTTCCGAAGGCTGAAGTACCTGATGGAGCGACGCTTCCCGTGTGGTGTTTGCCAGAAGTCCTTCAAACAGTCCTCACATCTGGTCCAGCACATGTTAGTGCACTCCGGGGAACGACCATACGAATGCGGCATCTGTGGCCGCACCTACAACCATGTCTCCAGTCTCATCCGCCACCGACGCTGCCACAAGGATGTGCCACCAACACCAACTGGAGGTACGCCACAGCCTGGGCCCGCACTCCCTTCACTGGGCCTCCCGGTATCCACAGCCAGTGCCACAGCCAGCTCTGACCCCGCCGCAGTGTCCTCTGGCCCCTCAGCCACCCCTGCAACGCCTGCCACCTCCACTGATGGGAACACCACCCCTGCTGCCCCACCCGGGGTGGCCATGCCTCCCTCTGCCACTACTGGCGGTGATGGCCCATTTGCCTGCTCCCTCTGCTGGAAGGTCTTCAAGAAGCCTAGCCACCTCCACCAGCACCAGATCATCCACACGGGTGAGAAACCCTTCTCCTGCTCCGTGTGCAGCAAAAGCTTCAACCGGAGGGAGAGCCTCAAACGTCACGTGAAAACGCACTCGGCCGACTTGCTGCGCCTGCCCTGTGGCATCTGTGGCAAGGTCTTCCGCGATGCTTCCTACCTCCTCAAGCACCAGGCAGCCCACGCAGCGGCCGGGACTCCGCGGCCGGTGTACCCCTGCGACCTGTGCGGGAAAACATACTCCGCACCGCAGAGCCTGCTGCGACACAAGGCTGCCCACGCACCACCTGTGGCCACGGAGCCGGCAAAGGACGGGGCTGCCTCGGTCCCACAGCCACCACCTCCCTTCCCCCCAGGTCCTTACCTCCTGCCCGCGGACCCATCCACTACCGACGAGAAAGCCACAGCGGCCGCAGCGGCTGTGGTGTATGGTGCGGTGCCTGTCCCACTTCTCAGCGCGCATCCGCTGCTGCTCGGCGGTGCGGGGAATGGTGGTGCTGGAGGCCCGGGCGCAGGCGGCCCCAGCAAGACGTTCTGCTGTGGCATCTGTGGGCGCGCGTTTGGGCGCCGCGAGACCCTGAAGCGCCACGAGCGCATCCACACCGGCGAGAAGCCCCACCAGTGCCCGGTGTGCGGGAAGCGTTTCCGGGAGTCCTTCCATCTGAGCAAGCACCACGTGGTGCACACCCGAGAGCGGCCCTACAAGTGCGAGTTGTGCGGCAAGGTCTTCGGCTACCCGCAGAGCCTCACACGCCACCGCCAGGTGCATCGGCTCCAATTGCCCTGCGCCCTGGCCGGAGCCACAGGCCTCGCCACCGGCCAGGGGACCACTGGGGCCTGTGGACCCGGAGCTGCAGGCACTTCAGGTGGGCCGGCCGACCTGAGCTATGCCTGCTCAGACTGCGGGGAGCACTTCCCGGATCTCTTCCACGTCATGAGTCACAAGGAAGCTCACATGTCAGAGAAGCCGTATGGCTGTGACGCCTGCGGCAAGACGTTCGGTTTCATCGAGAACCTCATGTGGCACAAGCTGGTTCACCAGGCTGCCCCGGAGCGCCTTCTAGCGCCAACACCCAGTGGCCCCCAGTCTTCTGATGGCGGCAGCAGCGGCGGCGGCACCGATGCATCCAGCGTGCTGGACAACGGACTGGCCGGAGAGGTGGGGACGGCTGTGGCAGCGCTGGCTGGGGTGTCTGGGGGCAGCGAGGATGCGGGTGGGGCGACGGTGGCCGGATCGGGTGGCGGGACCAGTTCAGGCGCTGAGCGCTTCAGCTGTGCCACATGCGGCCAAAGCTTCAAGCATTTCCTAGGCCTGGTGACTCATAAGTATGTGCACCTGGTGCGCCGGACCCTTGGTTGCGGCCTCTGCGGTCAGAGCTTTGCGGGCGCGTACGATCTGCTCCTGCACCGCCGAAGCCACCGGCAGAAACGGGGTTTCCGCTGCCCAGTGTGTGGGAAGCGCTTCTGGGAGGCGGCCCTACTGATGCGCCACCAGCGCTGTCACACAGAGCAGCGGCCCTACCGGTGCGGCGTGTGCGGTAGAGGCTTCCTGCGCTCCTGGTACCTGCGGCAGCACCGCGTGGTGCACACGGGCGAGCGCGCCTTCAAGTGCGGCGTGTGCGCCAAGCACTTCGCGCAGTCTTCTAGCCTAGCGGAGCACCGGCGGCTGCACGCTGTGGCTCGGCCTCAGCGCTGCGGCGCCTGCGGCAAGACCTTCCGCTACCGCTCCAACCTGCTGGAGCATCAGCGGCTGCACCTGGGCGAGCGCGCCTACCGCTGTGAGCACTGCGGCAAGGGCTTCTTCTACCTGAGCTCCGTGTTACGCCATCAGCGAGCCCACGAGCCCCCGCGGCCCGAGCTGCGCTGTCCTGCCTGTCTCAAAGCCTTCAAGGATCCTGGCTACTTCCGGAAGCATCTGGCTGCCCATCAGGGCGGCAGGCCCTTCCGCTGCTCCTCCTGCGGTGAGGGCTTCGCCAACACCTATGGTCTGAAGAAACACCGCCTGATGCACAAGGCTGAGGGTCTTGGGATGCCCGGAACAGGGGGAAGCGCCTTGGCCGGAAAGGATCCCTGACCAGGGTGTTTCA
Seq A exon
GTATGCCACTCCAATCAGATACTCCCTTCTGGACTCTTCCTTTCTGGGGCTGCTGGTCAGACTCTCCCCACCCCTTCTTACTGTCACTCATTCTAAAGACTCCCAGGTGGTCTAGCTTCCTTCCAGCCCCATGCCCTACAAACTGAAGATTAAATTGCTCCAATCCCAGGCCATTCTGGCCCTTCCTTCTTCATCTGTCAGACACTGGACTTGATCCTCTGTCCAGTAGGATCCTCTTTTGTAAACCTCATCTGCCACCCAGCAGCAATTCTGGCTCCAGTGAACTCTGTGGTGGAGATGGGTTTGAACTACTCGCCCTCTCCACATCCTCTGGGATCTGGCTGGACAGTGGACTATGAAGGGTTGGGAGGGCACAGGTGGGGGTCTGGGTGCTCTTGGATGGGGGGTGGGGTGGGCAGGGGACAGACGCGGCTTGTACAGAGCAGAGAACAATAAATGGTATCAACAGGGCCGCTGGGGTCTGTCCTTGCTGTTCCTAGGGGGTTCCACTGACTGGCTGGACACATCACCTCACATCACTCTCTTTTCACCTAG
Seq C2 exon
GTTGAGTGAGGATTTGCCATGTCCCAGGCATTAGCCTGAGTGAAACAGGGAAGTCGCCCTCTCAGGAACTGATTTGAGACCCCGAGACTCCCTTCCATGATGCTCTCAGCCACCATGGAAACACCGGAAGCCTTCTGTCTGCCAAGCCCTGACCTGGGCGCTAGGGAGACTGATGAATTGATCGGACATGACATTCACACTCCAGTAGGCTGGGAGAGCATACCTGAGGAACTTAACACAGTCTGCAGACTTACTGGAGACGGTCTCATGTAGTCTAGGCTAGCTATGGACTTGCTTTGTAGGTACAGATAGGCTTGATTTTCCCCCATTTTTGAGACATGGTCTCTCTATGTAACCCTTGGCTCTCCTGGAATTCTCTGTGGACTAGGCTGGTTTTGAATTTACAGAAATCCACCTGCCTCTCTGCCTCTCTGGTGCTGAGATTAAAGGTGTGCACCACCATAGCTGGCTAATCTTGAACTTTTTTTAAAATCTAGATTTTTTAAAACATGTAAAGAGATTCGGTATATGGGTGTTTTGCCTGCGTGTATGTTTGTGCACCGCTTGGTGCCTGGTGCCCATGGAAGCCAGAAGAGGTCATTGCATCCTCAATCTAGAGCCACAGGTGGGTGTGAGCTACAGGTGGGTGTTGGGAATCACACAACAATCATCTGGAAGTAACTGCTGAGCTATTACTTCAGCCCCAGATTTTATCTGTCCTCTCAGTTTGACACATATCTGTATCTGTATGCGCGCGCGCACACACACACACACACACACACACACACACACACAAACTTTGGTTGTACACACAACCTCCACTATGCTCTTATCCCTCTCCCAATCCTGCTGAGCCCTTTCTTGCCAACAAGCCAGTCTTACTTTCCTGTCTTTTATTTTCTTGGTGACCCATTAAGTTTAGTGAGGGTTGCATGTATAAACATGCGTTGGAAGGCTTATTTACCTGAGCAGGGGCAGCTAACCAGTAGCTCTACCACTGAGGACTATGGTTCCCCCTCTCCAGGCAACCATTAAATGCCTATAGCTCCTAAGAGACAGGTGGGACATTATGAGCCTCTTCCCTGAGACTACAGACTTTCGACCCTCCTGTTTCCATATACAAAGGGAAAATGGGCATTATGACTGGCTTCTGTGGTGCTGGAGATTGAACCCAGGACACCATGTGTACTAGAAAAGCACTCTAGCAGCTAAACTGCACCCCTAACCGCACTGCCCTCTTCTAAAAGAGTGTACAAACTCCTTTAGCTTTCAGTCCCCCCACTTCTCAATGATTTGAACACTGAGTCAGAGTGTCAGTTACTATATTTCACTTCTCCTTGAATCTGACCACTTATCTGCACTGCCACTGTGTTGGTAGTCCCCTGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTCTGTTTTGTTTTCTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTCGAGCTCAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACCGCCTGGCTTTTTTGTTTGTTTGGTTGGTTTTTTTTTGGGGGGGGGTAGTCCCCTCTGAAAGCAGCAAGGAGTTTCTGTTTAGTGGCAAGGATTCATGTGAAAAAACCAAGACACTCCGTTGTCTTGGGAAGCAGGCTCTTTGGAGGAGCTGGTGAGTTTTTATTATGCATCATCCGAGGATCGTCTCTTGGGGATGCTGGATGACAAGGACTGAACTAGCAACACATCTCCATGAGAAAATTAGGGACCCTTCTGAGTAAGTACACCAACCTCCTACATCACCTCATTGCACAAAACTTCTTACAACACAACCAAATAGACATCTCCAAACAGCCCAAGCCTGGTCACTCACCATTCCAGATAATGGATAACTACCCAGAGAATTGGAATACAAGACTGACAGAGAAGACTTACAGAAAGTCTTTTAATAGGAACAGACTGGAAGTCCCCACTCTTACCCTGTACGCTAACTCCCAAGTCCTTTTAGCCCCTTACCACAGTGTCATTTCTTTCTTTACACCCTGTACTGGCCCACCAAGGTGGTCACTAGCTAACCCTGCCTCAGAATTGCCCAGGGCTATGCAGGAAGATGCCTACTTCAGAGTGCAGAATAGAGAGATGGGAAATTTCTTTATAGACAGGTTCTGAGCCTAAGGCTTAAAGGGATACCAAGTGATTGCCTGCTTATAGTGTGTGCTCTCAGTTGCTTGCAACTAAGTTTAGTGGGTTAAAGAGAGCCCACTATGGGGTAGGATGGAGAAGTGAGCAGGGCTTAGAGTGAATCTTTATGAGCAGGTTCACATCTGAGAGATGTGGTTTAGGTACTCTCGGTTTTGAGGGGAAGGTATCCCAGCATCCCTTTAGAGATGACTTGGTGGGCATCTTCTGCACTGGAGGGTAGGCATCCCAGGACCAGTGCAATCCAGTTGAAGTAGGCAAAACATTTCATTGGACCAGAGGTGGTGGTACAGAAAGTCTTGCTTTCCAGCCTGGTCTGGTCTGGACCTCATGATCCTCCTGCCTCAGCCTCTAGTGTACTGGGATTACAGGCCTTTACCATGCCCAGCTGTCTATGTATTTTTAGATATATCTGGGTACCCACAGACCCCAAGTACCTCTTTCCTGAGTCTCAAGTGTAGCATGGGTTTCTGGGAGACCAGAACCAGGTTCCCTTTTTCATCTAACTCCAACTGCTCATGATTTCTCCTTGGCCTCTGCCTCTATTTGCCCACCCACCTCTCCTACGATATGTCCTAGCTTCCAGCCTACTGGTCAACCTCCACATTCACTTTCACAGTCTCTCTACACCCTTCTTCCATAGTGTTCTCTGTCCCACATTTACTTCATGATTCTTGGGACACTGAAGATGATCTCAGTTGGCCTCTAGACTCTCCCACTCCAGACCCTGGTCCATGGAAGTGGGTGCGCTGGTGTTTGCGGAAGTTGGAGGAGTTATTGAAAGTGCGGTCACAGAGCATGCATCGGAAGGGGCGCTCGCCTGTGTGGATGCGGGCATGACCACTCAGCACAGAGGACTGCGTGAAGCCTTTGCCACAGATACTACAGTGGTAGGGCCGCTCCCCTGTATGCACCCGCTCGTGGTCTCGCATATCTGAGGAGCGTCGGAAGGGCTTGGCACAAAACCTGCAGGCGAAAGGCTTGCCTACCACAGCACCCGCAGCTGCTGCAGCCATCACCACCTCCGACCTCTCCTGGGCCACCCTTGAGTTTGGCTGTCCGGTTGTTGTTGTGGGTAGAAGCCTTTCAGAGGTGCCGGGCTCTACCCCATGTCGGTGTTGGTGCCGGAGCAGAGGTGCCAAGGCCTTAAAAGCCCGTGGGCAGAGGGAACAGCGGTAAGGCCGTTCTCCTGTGTGCAAGCTGTAATGGGCACGCAGGCTAGCAGGACCTGGACAGCTGTGGCCACACACATGACAACGGCTAGGATCCCCATCCTGCCCAAGCCCCTCCATGCTTGCCAGGTGGCCATGCTCATGAAACAGCAGCTCTGAGACTAGACGGAAGGCAGCAGGACACAGGGCACAATGAAAAGATCCTGGCTCTGGGGGCTCAGGGACCGATGTGGTATCTGTGACTTTTACCACCTGGATCTCGATGAGGTCACCTGGGGGTGTGACAGGGCGACCATCAGGCACCAGGACCTGGAGAGCAGAAGAAAAAACAGGAGGCTGTGGACCTGCTTGGAGAGAGTCTTCATTCAATAATGCCTCCACTTATTCAAACACTTGCTTTGGCAGTGAAGATGTCTCAGTGGGTAAAGACACTTACCAAATCTGACGACCTGAGTATGATCCCTGGGACCCACAGGGTGGAAAGACAGACTGACTGACTTCCTGAGATGCCCTCTGACCTCCAAATTCCTGTGCCATGGCACACACTCACACCCTCTCCTCACATAATAAATGAAAAATAAAAATTTAAATAAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074405:ENSMUST00000076251:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF0009621=zf-C2H2=WD(100=2.2),PF139121=zf-C2H2_6=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF139121=zf-C2H2_6=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTGTCTCAAAGCCTTC
R:
GAAGGCTTCCGGTGTTTCCAT
Band lengths:
355-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types