MmuEX0053676 @ mm9

Exon Skipping

Gene

ENSMUSG00000057254 | Zfp870

Description

zinc finger protein 870 [Source:MGI Symbol;Acc:MGI:3029586]

Coordinates

chr17:33019616-33023028:-

Coord C1 exon

chr17:33022902-33023028

Coord A exon

chr17:33022648-33022708

Coord C2 exon

chr17:33019616-33021110

Length

61 bp

Sequences

Splice sites

3' ss Seq

TTTCTGTGTCTGCATTTTAGGAA

3' ss Score

11.64

5' ss Seq

AAGGTAATT

5' ss Score

8.83

Exon sequences

Seq C1 exon

GAGTCAGTGAGCTTTGAGGATGTGGCTGTGAAGTTCACGCAGGAGGAGTGGGCTGTGCTGGATCCATCCCAGAAGAAGCTGTACAAAGATGTGATGCAGGAAACCCTGAAGAACCTGGCTTCCATAG

Seq A exon

GAAACAAGTCGGGCAAACAGAAGGTTATAAATGAGTATGGAAAACTATGGAGAAAACTAAG

Seq C2 exon

CAGCCACCTGGCGGGGAAATTCAGTGACTATAATGAAAATCATCAGTGTGCAGACATCTTCAACTGCAGTCCAGGGCACTCTGTGAGCCTGCAATCTTGTCCAGGACGTGCTACATTTGAAAAGAATCTCTGTGAAGAAGGTAGAATTGGCCATTCATCTCTGGGTGTGCCATTGAACCATCTGGTAGGACCTTATGAAGACCAAGAACATGGACAGCCATTGTATAAACATAAGGAGTTTGAGAGCAGCTCCAATTCTCTGTCCCTTCAGATGCATACAAACACTCACACCGGAGAGAAACCTTCCAAAAATAAGGGCTTTGAGGAAGACCTTCCTTGTGTCAGATCTGGCCAAACGTATAAACAAAATGACTATTCAAAGAAGTCTTATGTGCACAGGCCATGTGGGAAAGGCTTCACGCATCCCAGTCCTTTACAAAGGCATGAGAAGAGTCACAGCGTTAAGAAGCCCTATGTATGTGAACTGTGTGGCAAAGGCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000057254_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.157

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF0128613=XPA_N=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF054957=zf-CHY=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)

Main Inclusion Isoform:

ENSMUSP00000077134