MmuEX0053679 @ mm9
Exon Skipping
Gene
ENSMUSG00000061371 | Zfp873
Description
zinc finger protein 873 [Source:MGI Symbol;Acc:MGI:3040689]
Coordinates
chr10:81521162-81522704:+
Coord C1 exon
chr10:81521162-81521241
Coord A exon
chr10:81521428-81521488
Coord C2 exon
chr10:81522262-81522704
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGTACTGTATTTTAGGGT
3' ss Score
9.34
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGGGCTTTGCTGGATTCTTCCCAGAAGAGTCTCTACAAAGATGTGATGCTGGAAACGTGCAGGAACCTCACTGCTATAG
Seq A exon
GGTACAGATTGGAAGACCACAATATTGAAGAACACTGTCAAAGTTCTAGAAGACCTGGGAG
Seq C2 exon
ATACATTTGTAATTGTGGATACAAGCCCTGTGAGAATGAAGACCATGGAAAGAAGCAATGTTCCTTTGCATGCAACAGTTTTCTTCAAATGTATGAAAGAATCTACAATGAAGAGAAAGCCTATGAATGTAATCAATACAGTAAAGCCTTTGTAAATTTCCATAGTCTTCCACAACATGCAAAAAATCACCCTAGAGAACAACCGTATGAATGTAATCACTGTGGTAAAGCCTATGTGAGTCCCAGTTCTCAGATACACAAAAGAAGTCATGTTGGAGAGAAACCTTATGAATGTTCGAAGTGTGGTAAAGCCTTTGAAAATGACAATCATCTTCAAAATCGTGAAAAACATCATACTCTTGAGAAACTCTTTGAGTGTAGTCAATGTGGAAAAGCCTTTGCAAGTCGCAGTTATCTTCCAATACACAGAAGAATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061371-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGCTGGATTCTTCCCA
R:
AGGAACATTGCTTCTTTCCATGGT
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: