MmuEX0053679 @ mm10
Exon Skipping
Gene
ENSMUSG00000061371 | Zfp873
Description
zinc finger protein 873 [Source:MGI Symbol;Acc:MGI:3040689]
Coordinates
chr10:82058370-82061586:+
Coord C1 exon
chr10:82058370-82058496
Coord A exon
chr10:82058683-82058743
Coord C2 exon
chr10:82059517-82061586
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGTACTGTATTTTAGGGT
3' ss Score
9.34
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCTGCGGTGACCTATGAAGATGTGCATGTGAACTTCACTCATGAAGAATGGGCTTTGCTGGATTCTTCCCAGAAGAGTCTCTACAAAGATGTGATGCTGGAAACGTGCAGGAACCTCACTGCTATAG
Seq A exon
GGTACAGATTGGAAGACCACAATATTGAAGAACACTGTCAAAGTTCTAGAAGACCTGGGAG
Seq C2 exon
ATACATTTGTAATTGTGGATACAAGCCCTGTGAGAATGAAGACCATGGAAAGAAGCAATGTTCCTTTGCATGCAACAGTTTTCTTCAAATGTATGAAAGAATCTACAATGAAGAGAAAGCCTATGAATGTAATCAATACAGTAAAGCCTTTGTAAATTTCCATAGTCTTCCACAACATGCAAAAAATCACCCTAGAGAACAACCGTATGAATGTAATCACTGTGGTAAAGCCTATGTGAGTCCCAGTTCTCAGATACACAAAAGAAGTCATGTTGGAGAGAAACCTTATGAATGTTCGAAGTGTGGTAAAGCCTTTGAAAATGACAATCATCTTCAAAATCGTGAAAAACATCATACTCTTGAGAAACTCTTTGAGTGTAGTCAATGTGGAAAAGCCTTTGCAAGTCGCAGTTATCTTCCAATACACAGAAGAATTCATACTGGAGAGAAACCATATGAATGTACTCAATGCGGTAAAGCATTTACAAGTCGCAGTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061371_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATGGGCTTTGCTGGA
R:
ATGGTCTTCATTCTCACAGGGC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types