RnoEX0003253 @ rn6
Exon Skipping
Gene
ENSRNOG00000021900 | AABR07055834.1
Description
NA
Coordinates
chr7:10772761-10773887:-
Coord C1 exon
chr7:10773808-10773887
Coord A exon
chr7:10773540-10773600
Coord C2 exon
chr7:10772761-10773000
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGGTACTTATTTTAGGGT
3' ss Score
9.54
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGGCTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAAAGATGTGATGCTAGAAACATGCAGGAACCTCACTGCTATAG
Seq A exon
GGTATGGATTGGAAGACCATAATATTGAAGAACACTATCAAAATTCTGGAAGACATTGGAG
Seq C2 exon
GTATAACATCCGTCATTGTGGATACAAGCCCTGTGAGAATAAGGGCCATGGAAAGAAGCAATGTACCTTTGCATGTAACAATTTTCTTCAAACATATGAAAGAGTCTATACAGAAGAGAAACCCTATAAGTGTAATCAATACAGTAAAGCCTTTTTAAATTTTCATAGTCTTCCACAACATGCAAAAAATCATCCTAGAGAAAAACCATATGAATGTGGTAAAGCTTTTGTAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021900_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000042386fB160
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCTGGATCCTTCCCAG
R:
TTGCTTCTTTCCATGGCCCTT
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]