MmuEX0053708 @ mm10
Exon Skipping
Gene
ENSMUSG00000033972 | Zfp944
Description
zinc finger protein 944 [Source:MGI Symbol;Acc:MGI:2442394]
Coordinates
chr17:22343640-22358988:-
Coord C1 exon
chr17:22358823-22358988
Coord A exon
chr17:22355081-22355134
Coord C2 exon
chr17:22343640-22343693
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTGTATTCTTCTAGATG
3' ss Score
8.81
5' ss Seq
TCAGTATGT
5' ss Score
5
Exon sequences
Seq C1 exon
GTGTGAGCATCTATCAGTTTTGTTCCATGAAACGTTCCCGGTGCTTTCTGAAGAATCTCTTTCCCACATGCAGGTCTCCCACTGCTCAGCCAGTTCTGCTCACCTGTGAATGAGAACTAAGAGCCCTGGGTGATGAAGACAGAGGAGACTGTAGCCAAGGATCCAG
Seq A exon
ATGCAGACATCCAGTTAGACCAGCACCATGTTTTGAAGATACTATCCTTTTTCA
Seq C2 exon
ACTTGGAGAAGAACAATAAGAAGAATGGATGTTTCCCTGGTAAATGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033972_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCAGCCAGTTCTGCTC
R:
TGGGGAGCATTTACCAGGGAA
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types