MmuEX0053708 @ mm9
Exon Skipping
Gene
ENSMUSG00000033972 | Zfp944
Description
zinc finger protein 944 [Source:MGI Symbol;Acc:MGI:2442394]
Coordinates
chr17:22480607-22495955:-
Coord C1 exon
chr17:22495790-22495955
Coord A exon
chr17:22492048-22492101
Coord C2 exon
chr17:22480607-22480660
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTGTATTCTTCTAGATG
3' ss Score
8.81
5' ss Seq
TCAGTATGT
5' ss Score
5
Exon sequences
Seq C1 exon
GTGTGAGCATCTATCAGTTTTGTTCCATGAAACGTTCCCGGTGCTTTCTGAAGAATCTCTTTCCCACATGCAGGTCTCCCACTGCTCAGCCAGTTCTGCTCACCTGTGAATGAGAACTAAGAGCCCTGGGTGATGAAGACAGAGGAGACTGTAGCCAAGGATCCAG
Seq A exon
ATGCAGACATCCAGTTAGACCAGCACCATGTTTTGAAGATACTATCCTTTTTCA
Seq C2 exon
ACTTGGAGAAGAACAATAAGAAGAATGGATGTTTCCCTGGTAAATGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033972-'4-7,'4-3,5-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCAGCCAGTTCTGCTC
R:
TGGGGAGCATTTACCAGGGAA
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: