MmuEX0053712 @ mm9
Exon Skipping
Gene
ENSMUSG00000059142 | Zfp945
Description
zinc finger protein 945 [Source:MGI Symbol;Acc:MGI:2445132]
Coordinates
chr17:22998473-23002303:-
Coord C1 exon
chr17:23002214-23002303
Coord A exon
chr17:22998699-22998819
Coord C2 exon
chr17:22998473-22998528
Length
121 bp
Sequences
Splice sites
3' ss Seq
GAAATTACGTTTTAACCTAGGTA
3' ss Score
4.47
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
GTCCCCACTGCTCAGCCAGATCTGCTCACCAGTGAATCAACTAAGAACCCTGGATGGTGAAGAGAGAGGAGACTATAGTAAAGAATCCAG
Seq A exon
GTACCCACCAGCCATTTGGCTATGACTCCAGTCCCTGCAAGAGAAGCTTCCAGTAATAACTCAGAGTAATAGTGTTTCGCGCCACATATGCGTGTTCTATATTATCCTGGTGGCAGCTGAG
Seq C2 exon
AAACTTGGAAAAGAGCAATAAGAAGAATGACAGCTTCTTTGGTAAATGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059142_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.778 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCACTGCTCAGCCAG
R:
CTGGGGAGCATTTACCAAAGA
Band lengths:
146-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: