MmuINT0006677 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:22998473-23002303:-
Coord C1 exon
chr17:23002214-23002303
Coord A exon
chr17:22998529-23002213
Coord C2 exon
chr17:22998473-22998528
Length
3685 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TATGTTTGTTCCTGAGACAGAAA
3' ss Score
0.81
Exon sequences
Seq C1 exon
GTCCCCACTGCTCAGCCAGATCTGCTCACCAGTGAATCAACTAAGAACCCTGGATGGTGAAGAGAGAGGAGACTATAGTAAAGAATCCAG
Seq A exon
GTATGTTAGAGGAACTGAACAAGGGGTGAGGTGGGCCTTAAGTGACAATAAAAAGAGAATGTGACATTGGTTTTTCCAGATTCTATTTCATTAAGCATTCAGGAAATTTTCATTGAGAATAATATTAGATGTTTTAAAATGGATTTTTCCTTATAGGTTGTACAGTGAACAGTTTTTTTCAGTATTTAATTAGCTATGGATCTCTGAATTAACTGTTGCCCATTAACAAGTTTCTCTGACATAGACTGAAAGCAGCACCAAGCTATCTATGTGACCAAGCTATTTGAACATGTAGCAAATGTCAGAAGTGAATTTTCTTCTAGGGCCTGAGGTTTCCACTATAACCCATGTATTTCACACACATACACTCCATCCCCCATATGGAGTTGGCCTCAGATTGAACCAGAAAGCCTTCTGTACCCACAAGTTATCTTAGCACTATGGTACCAGTGGACATGGCCTTGCATGGCAGATTGAGATTGGAGCACACAGGATCTATAGCTGGGTATGGACATTGATACCTCTGTCCCCAGCCCCAGTCTGCAGAGCAGTTTTTGACACCATGAATGCAACCACCAGGCTGTCCAAGACATTTGTAGACAGTGTGAATAGTCTAATCTGAGGTGTTTGTTTGTTTTGTTTTTTTCTCTCAAGAAGGTCGACTTTTTTCTGCCTATCTTATATTGTCCTCTTTAAGCATGTCTCCGACCTTGAATTGTGTACTGAGTATGCTCTGAGTTAGTTCTGATTAGAGCACAGTAATTCCACTTGTCCTTTGTTTTATACTCTTTGCATTAGCTGTGCCTCTGTTCCTGACGTATGTTTCATCTGTTCTCACATTCTTGAGGGCTTTTATATTCAGCAAATGTCGCATTATTACAGAGCTTTCATGTGTCTCTTGACATAGTCATTTTTCTTTTCTCACTGACTTTACATCTTTAGAGTCTGACATTGATTAGTTCGTAGGTGTTAAAATAGTCTTGCATTCTTGATGCGAACTCACCTTTGCTTCCATTTCTGTGTAATATAGAGACCATGTCTATGTAGATCCTAAAAGCTGGTCTGTCTTTTTTTTTTTTTTTTGCATACAGTGGTTTGAGCTCCTCCGCTTTGGGCATTGAAGTAAAGCCAGCTTTGTATGATGACTTTCTAGTGTTCCTCTTCTTTGTGTTTTAGGTAATAATCTCCTTTAGGCAGATCTCCTAAGGTTTGCTTTAGGAAAGGAGAATTCCGTATAGTCCCGTCCTCAGATGCTGTTAGAGAAAACTCCCTGCTTCAGTATCAGCACCTGCTTGATGCGGGTTCTAGTTATATGATGTAGGAGGTTGATTTATTCACTTGTTTCTAGGAACTCATCATTTCTTCTTCAATTCTGATTCATTCATGTATGACTTTCCATAGCCCTGCATAAGGTAACACTGACATCCCCACATATGTTGTGTCATGTGGATTATATTAGTACAAATTTTCTAGAGATACTGCTTGATATAGTGCACAAGCCATCCATTTGAAAGCATTAATTAATGTCTCTTCTAATTACTTTGTTCTCTTCTTATCTTTCGGAGGTGGAAGGCTACCCTACTCCATGTTTTTCCTTTCCCTGTAGCTATGTTTTATATAGGTAGAGAATTTCAAGAGAGGTTTTATTAGACAGACTTCCAGTTATTTCTTTAAAATATTATTTAAGTGTGGGAGTATACATCTGCATTTTTTATGTGCACTGTATTTATTTATGAAGCCCATTGAGCCCTGATATAGTTATTAAACCCATGGCACAGGAGACACACACAATCATAAGTTGCCTTGTGTGTAGAGAGAATTAGATTATTTCTATTCAGAAACAGTGAGTACCCTTTTGCCCTAGAGAGATTACTCCAGCCCCTACATTTAAATTTCTGGTGCTCTTTCACAATGGAGCCAGAATTTAACACTGAGTTCTATTTTATTGAAAAATGAAGGAAGAGTCATCAATGATATTTACCTATGCAACCTAAAATCATGTTAGATGATTGAGCTCAAAAGGTGAAGAAAAAATTAGAGCTTGAAATCAAAAGATTCAGATTTCCAATTGAGCAATAATATTCATAATTAATGAAGAGTTAGTATAATTCCTACACAACTTAGTACATTTGTTTCAATCATAGAAACTCTCCTTCATCTGAATGCATTGTCATATATGCATTTATTTAGATAGATATTTCTAACTATTTTGTAGTGAAATCTCATGGAATTACTGAAATTTTTATCTATCTGTAGTGGCTCTGTCACCTTTTAGAAAACTTAGATAATATTAATGCTAACTTTTCTGTTTACTTCATGGTTGTTAGATATTGTTATAAAATGATGGCATAATGTATTTCATTCTATGTGTTGTTTGTCATGTTCTATGTATGCACTGATGTTATACTCCTTACTGTTTCAAGGAAAAAAAAAAAAACAAGGCTGACAGCTGTAGAATTTGGAAGCACAGTTTTAATCACTGTAATTTACCATCTGAGATGTGACACTGGTATCCTATTTGAGATCAACATAGAGTTCTTAGATGTACATTCCTGCATCTAGAACTCAAGTGTTTACCTTATATTCCCTGAACCTTTGCTGATTATGAGACTATCATATCATCCTGCTTTAGAGAGAAAAGAAGATGCAATATATAACTATTTTTAAAAAGATAAATTTTATTAAAATTATATTTTCCTTTTATTTATGTGTGTTAGTATATTTGCCTAAATATATGCATGTGTGCTATGTAGTCCTCATGCCTGTAGAGTTCAGAGTAGAGGACTGGATCCCATGGAACTAGACTTAAAATCTGTTGTGTAGCTGGGAATGGAGGTGCACACGCACTGAGGAGGCTGAGGCAGTTGGATCTCTGAGCTCCATGCCAGCTTGATCCAAAAAAACCTCTGGCTTGCATGCACTCTTCATTTCAGACTCTACCTCCTTTTTTCTAGAAAAGGTACAGCATTGTATCTAGGCCTCAGGAGCTCAACTGAGCATATTAGAATAGTTAAGCAGTGAGACCTAACTGCAGACAGTTGAACAGGATTTTAGGTGATCAATATTCTCACACAAAGATGTGCGTGTAACTTAGAAAACAGGTTCACATGGATTGGATGAATAAATTTGAAAGATACATTTTTACCTCGGTATGAATGTAAAGCCTTTGTAGGTGATGATGTTCCTGTAACTTGATATTATGACAATTATTTTGACAAAAAAATACCATGGTATTTGGCAAATAAAGGATCTGTTTCTTATTCAAGACAACAGGGCACACATGGAAAAGAAATGTACTATATCTACAAGGTAAAATGAAATTTTATGAAATGTGACTGAAAAATCAGATACTGTTTTCTAGTATGATGACTAATGAAATTACGTTTTAACCTAGGTACCCACCAGCCATTTGGCTATGACTCCAGTCCCTGCAAGAGAAGCTTCCAGTAATAACTCAGAGTAATAGTGTTTCGCGCCACATATGCGTGTTCTATATTATCCTGGTGGCAGCTGAGGTTAGAAAAAAAAAAAAAACCCTCAAGTTGTAGTCAAGTTTTCTGTTATCATTTTGGTTCTTGCATCTATGCTTGGCATTGTTTGTAGAAGAGTTACATTAATTTTAGCTTTGTAGTTTTGGCACCTTGATAAGAAATTTTAAGAATTCCTATGTTTGTTCCTGAGACAG
Seq C2 exon
AAACTTGGAAAAGAGCAATAAGAAGAATGACAGCTTCTTTGGTAAATGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
-A630033E08Rik:NM_001110254:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: