MmuINT0006677 @ mm10
Intron Retention
Gene
ENSMUSG00000059142 | Zfp945
Description
zinc finger protein 945 [Source:MGI Symbol;Acc:MGI:2445132]
Coordinates
chr17:22861732-22865336:-
Coord C1 exon
chr17:22865247-22865336
Coord A exon
chr17:22861853-22865246
Coord C2 exon
chr17:22861732-22861852
Length
3394 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GAAATTACGTTTTAACCTAGGTA
3' ss Score
4.47
Exon sequences
Seq C1 exon
GTCCCCACTGCTCAGCCAGATCTGCTCACCAGTGAATCAACTAAGAACCCTGGATGGTGAAGAGAGAGGAGACTATAGTAAAGAATCCAG
Seq A exon
GTATGTTAGAGGAACTGAACAAGGGGTGAGGTGGGCCTTAAGTGACAATAAAAAGAGAATGTGACATTGGTTTTTCCAGATTCTATTTCATTAAGCATTCAGGAAATTTTCATTGAGAATAATATTAGATGTTTTAAAATGGATTTTTCCTTATAGGTTGTACAGTGAACAGTTTTTTTCAGTATTTAATTAGCTATGGATCTCTGAATTAACTGTTGCCCATTAACAAGTTTCTCTGACATAGACTGAAAGCAGCACCAAGCTATCTATGTGACCAAGCTATTTGAACATGTAGCAAATGTCAGAAGTGAATTTTCTTCTAGGGCCTGAGGTTTCCACTATAACCCATGTATTTCACACACATACACTCCATCCCCCATATGGAGTTGGCCTCAGATTGAACCAGAAAGCCTTCTGTACCCACAAGTTATCTTAGCACTATGGTACCAGTGGACATGGCCTTGCATGGCAGATTGAGATTGGAGCACACAGGATCTATAGCTGGGTATGGACATTGATACCTCTGTCCCCAGCCCCAGTCTGCAGAGCAGTTTTTGACACCATGAATGCAACCACCAGGCTGTCCAAGACATTTGTAGACAGTGTGAATAGTCTAATCTGAGGTGTTTGTTTGTTTTGTTTTTTTCTCTCAAGAAGGTCGACTTTTTTCTGCCTATCTTATATTGTCCTCTTTAAGCATGTCTCCGACCTTGAATTGTGTACTGAGTATGCTCTGAGTTAGTTCTGATTAGAGCACAGTAATTCCACTTGTCCTTTGTTTTATACTCTTTGCATTAGCTGTGCCTCTGTTCCTGACGTATGTTTCATCTGTTCTCACATTCTTGAGGGCTTTTATATTCAGCAAATGTCGCATTATTACAGAGCTTTCATGTGTCTCTTGACATAGTCATTTTTCTTTTCTCACTGACTTTACATCTTTAGAGTCTGACATTGATTAGTTCGTAGGTGTTAAAATAGTCTTGCATTCTTGATGCGAACTCACCTTTGCTTCCATTTCTGTGTAATATAGAGACCATGTCTATGTAGATCCTAAAAGCTGGTCTGTCTTTTTTTTTTTTTTTTGCATACAGTGGTTTGAGCTCCTCCGCTTTGGGCATTGAAGTAAAGCCAGCTTTGTATGATGACTTTCTAGTGTTCCTCTTCTTTGTGTTTTAGGTAATAATCTCCTTTAGGCAGATCTCCTAAGGTTTGCTTTAGGAAAGGAGAATTCCGTATAGTCCCGTCCTCAGATGCTGTTAGAGAAAACTCCCTGCTTCAGTATCAGCACCTGCTTGATGCGGGTTCTAGTTATATGATGTAGGAGGTTGATTTATTCACTTGTTTCTAGGAACTCATCATTTCTTCTTCAATTCTGATTCATTCATGTATGACTTTCCATAGCCCTGCATAAGGTAACACTGACATCCCCACATATGTTGTGTCATGTGGATTATATTAGTACAAATTTTCTAGAGATACTGCTTGATATAGTGCACAAGCCATCCATTTGAAAGCATTAATTAATGTCTCTTCTAATTACTTTGTTCTCTTCTTATCTTTCGGAGGTGGAAGGCTACCCTACTCCATGTTTTTCCTTTCCCTGTAGCTATGTTTTATATAGGTAGAGAATTTCAAGAGAGGTTTTATTAGACAGACTTCCAGTTATTTCTTTAAAATATTATTTAAGTGTGGGAGTATACATCTGCATTTTTTATGTGCACTGTATTTATTTATGAAGCCCATTGAGCCCTGATATAGTTATTAAACCCATGGCACAGGAGACACACACAATCATAAGTTGCCTTGTGTGTAGAGAGAATTAGATTATTTCTATTCAGAAACAGTGAGTACCCTTTTGCCCTAGAGAGATTACTCCAGCCCCTACATTTAAATTTCTGGTGCTCTTTCACAATGGAGCCAGAATTTAACACTGAGTTCTATTTTATTGAAAAATGAAGGAAGAGTCATCAATGATATTTACCTATGCAACCTAAAATCATGTTAGATGATTGAGCTCAAAAGGTGAAGAAAAAATTAGAGCTTGAAATCAAAAGATTCAGATTTCCAATTGAGCAATAATATTCATAATTAATGAAGAGTTAGTATAATTCCTACACAACTTAGTACATTTGTTTCAATCATAGAAACTCTCCTTCATCTGAATGCATTGTCATATATGCATTTATTTAGATAGATATTTCTAACTATTTTGTAGTGAAATCTCATGGAATTACTGAAATTTTTATCTATCTGTAGTGGCTCTGTCACCTTTTAGAAAACTTAGATAATATTAATGCTAACTTTTCTGTTTACTTCATGGTTGTTAGATATTGTTATAAAATGATGGCATAATGTATTTCATTCTATGTGTTGTTTGTCATGTTCTATGTATGCACTGATGTTATACTCCTTACTGTTTCAAGGAAAAAAAAAAAAACAAGGCTGACAGCTGTAGAATTTGGAAGCACAGTTTTAATCACTGTAATTTACCATCTGAGATGTGACACTGGTATCCTATTTGAGATCAACATAGAGTTCTTAGATGTACATTCCTGCATCTAGAACTCAAGTGTTTACCTTATATTCCCTGAACCTTTGCTGATTATGAGACTATCATATCATCCTGCTTTAGAGAGAAAAGAAGATGCAATATATAACTATTTTTAAAAAGATAAATTTTATTAAAATTATATTTTCCTTTTATTTATGTGTGTTAGTATATTTGCCTAAATATATGCATGTGTGCTATGTAGTCCTCATGCCTGTAGAGTTCAGAGTAGAGGACTGGATCCCATGGAACTAGACTTAAAATCTGTTGTGTAGCTGGGAATGGAGGTGCACACGCACTGAGGAGGCTGAGGCAGTTGGATCTCTGAGCTCCATGCCAGCTTGATCCAAAAAAACCTCTGGCTTGCATGCACTCTTCATTTCAGACTCTACCTCCTTTTTTCTAGAAAAGGTACAGCATTGTATCTAGGCCTCAGGAGCTCAACTGAGCATATTAGAATAGTTAAGCAGTGAGACCTAACTGCAGACAGTTGAACAGGATTTTAGGTGATCAATATTCTCACACAAAGATGTGCGTGTAACTTAGAAAACAGGTTCACATGGATTGGATGAATAAATTTGAAAGATACATTTTTACCTCGGTATGAATGTAAAGCCTTTGTAGGTGATGATGTTCCTGTAACTTGATATTATGACAATTATTTTGACAAAAAAATACCATGGTATTTGGCAAATAAAGGATCTGTTTCTTATTCAAGACAACAGGGCACACATGGAAAAGAAATGTACTATATCTACAAGGTAAAATGAAATTTTATGAAATGTGACTGAAAAATCAGATACTGTTTTCTAGTATGATGACTAATGAAATTACGTTTTAACCTAG
Seq C2 exon
GTACCCACCAGCCATTTGGCTATGACTCCAGTCCCTGCAAGAGAAGCTTCCAGTAATAACTCAGAGTAATAGTGTTTCGCGCCACATATGCGTGTTCTATATTATCCTGGTGGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059142:ENSMUST00000088696:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types