MmuEX0053713 @ mm10
Exon Skipping
Gene
ENSMUSG00000059142 | Zfp945
Description
zinc finger protein 945 [Source:MGI Symbol;Acc:MGI:2445132]
Coordinates
chr17:22857250-22865336:-
Coord C1 exon
chr17:22865247-22865336
Coord A exon
chr17:22861506-22861561
Coord C2 exon
chr17:22857250-22857376
Length
56 bp
Sequences
Splice sites
3' ss Seq
TATGTTTGTTCCTGAGACAGAAA
3' ss Score
0.81
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTCCCCACTGCTCAGCCAGATCTGCTCACCAGTGAATCAACTAAGAACCCTGGATGGTGAAGAGAGAGGAGACTATAGTAAAGAATCCAG
Seq A exon
AAACTTGGAAAAGAGCAATAAGAAGAATGACAGCTTCTTTGGTAAATGCTCCCCAG
Seq C2 exon
GAACTGTTAACATTCAAGGAAGTGGCTGTTGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTAGAGAATTACAACAATCTACTCTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059142_MULTIEX1-3/4=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCTGGATGGTGAAGAGA
R:
TGTACAATGCCCTCTGAGCAC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types