MmuINT1035795 @ mm10
Intron Retention
Gene
ENSMUSG00000059142 | Zfp945
Description
zinc finger protein 945 [Source:MGI Symbol;Acc:MGI:2445132]
Coordinates
chr17:22861506-22861852:-
Coord C1 exon
chr17:22861732-22861852
Coord A exon
chr17:22861562-22861731
Coord C2 exon
chr17:22861506-22861561
Length
170 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
TATGTTTGTTCCTGAGACAGAAA
3' ss Score
0.81
Exon sequences
Seq C1 exon
GTACCCACCAGCCATTTGGCTATGACTCCAGTCCCTGCAAGAGAAGCTTCCAGTAATAACTCAGAGTAATAGTGTTTCGCGCCACATATGCGTGTTCTATATTATCCTGGTGGCAGCTGAG
Seq A exon
GTTAGAAAAAAAAAAAAAACCCTCAAGTTGTAGTCAAGTTTTCTGTTATCATTTTGGTTCTTGCATCTATGCTTGGCATTGTTTGTAGAAGAGTTACATTAATTTTAGCTTTGTAGTTTTGGCACCTTGATAAGAAATTTTAAGAATTCCTATGTTTGTTCCTGAGACAG
Seq C2 exon
AAACTTGGAAAAGAGCAATAAGAAGAATGACAGCTTCTTTGGTAAATGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059142:ENSMUST00000088696:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCACCAGCCATTTGG
R:
GGGGAGCATTTACCAAAGAAGCT
Band lengths:
175-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types