MmuEX0053852 @ mm10
Exon Skipping
Gene
ENSMUSG00000002266 | Zim1
Description
zinc finger, imprinted 1 [Source:MGI Symbol;Acc:MGI:1341879]
Coordinates
chr7:6689488-6696450:-
Coord C1 exon
chr7:6696369-6696450
Coord A exon
chr7:6695650-6695772
Coord C2 exon
chr7:6689488-6689564
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTATGTGTGTGTAGGTC
3' ss Score
9.2
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCATTCCACTCCGGGTGGCCGCAGGCTGCGGTGCCTGGAGGCGAGTGCGGACGGACGGATAACCAAGCGCGAGGACGAGAG
Seq A exon
GTCTTTGGACAACTCACAACAGCCTGTTTTTTCCTACTATGTGGGTCCCAGCGATGGAACTCGAGTTATAAGGCTTGGCAGCAATCGCCTTTACCAGCTGAACCAGCTAGCTGGTCCCAGATT
Seq C2 exon
AAGTTTGTTCCCTGTGCCTACAAATAGGATCATCACAAATGCCGATAACTCCAGCTCCAGGGCATCCGACATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002266_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCCACTCCGGGTG
R:
TGATGTCGGATGCCCTGGAG
Band lengths:
156-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types