RnoEX0101923 @ rn6
Exon Skipping
Gene
ENSRNOG00000015071 | Zim1
Description
zinc finger, imprinted 1 [Source:RGD Symbol;Acc:1310930]
Coordinates
chr1:70244694-70251649:+
Coord C1 exon
chr1:70244694-70244963
Coord A exon
chr1:70245578-70245697
Coord C2 exon
chr1:70251572-70251649
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTAAGGTT
3' ss Score
7.93
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATCGCAGGAGCGCTTGTAGCGCGCTCGTCTTGCTGGGGACTACATTTCCCACAGGGCCAAGCGCGCTGTGTCCGGGCTCTGGACGCTTCATAAACGGGAAGCCTCAGGCTGGACAGCACGGGAGCTTCTGGGACTTGTAGTCCTGTGGGCGGTGCCCTCGAGCTGGGGACTTGGGTTTGAAAGTCATCCCGCGGCATTCCACTCCGGGTGACCGCTGGCTGCGGTGCCTGGAGGCGAGTGCGGCTGGAGAACCGAGCGCGAGGATTAAAG
Seq A exon
GTTTGGACAACTTGCAAGAGTCCGTTCTCTCCTACTATGTGGTCCCAGCGATGGAACTCGGGTTGTAAGGTTTGGCAGCAATCGCCTTTACCAGCTGAGCCACCTAGCTGGTCCCAGACT
Seq C2 exon
AGGATTGTTCCCTGTGCCCACAGATAGGACTGTCACAAATGCTGGCTCCAGCTCCGGGGGATCCAACACCCTCGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015071_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCTGGACGCTTCATAAA
R:
TGGAGCCAGCATTTGTGACAG
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]