MmuEX0053866 @ mm10
Exon Skipping
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59504148-59505962:-
Coord C1 exon
chr11:59505828-59505962
Coord A exon
chr11:59505170-59505318
Coord C2 exon
chr11:59504148-59504254
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCACAGCCTGTTGCTTTCAGAAG
3' ss Score
4.9
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCGTCTCCCTTCGCTCCCAAGCCCAGCTGATGCATTCTAGAGGATCCCGAGACAGGGTTGGCCTGGCCAGGGACCGAGTCTGGCCCATGCATTGGAGCCGCCTCTGCCAAAACACCAGAGAGACCGAGCTGGAAG
Seq A exon
AAGCTCGCGTCGGGTGTCTGCCTTTACTTCGGCAATCAGAGGAATACAGAAAAGTTGAGGTTCCAGGTTGTTATTCGGTTGCTTGGTGGCTTTCTGGTATCGCTTGTCTTCCAGCAAAGTGGTGCTGCCCCGCTGGGAGTCTCTTCCAG
Seq C2 exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACGGTGACTTCGACTCCAAAGCTTCAAGATTGTGGCCTGCTGGGGCTATTATCCTCCAGGAGGACCTGTCCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCCCTTCGCTCCCAAG
R:
TGGAGGATAATAGCCCCAGCA
Band lengths:
221-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types