RnoEX0101437 @ rn6
Exon Skipping
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45849846-45851730:-
Coord C1 exon
chr10:45851534-45851730
Coord A exon
chr10:45850954-45851114
Coord C2 exon
chr10:45849846-45849951
Length
161 bp
Sequences
Splice sites
3' ss Seq
AGAGTATTCGCGGTTCACAGCCT
3' ss Score
2.43
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCGTCTCCCTTCGCTCCCAAGCCCAGCTGATGCATTCTAGAGGATCACGAGACAGGGTTGGCCTGGCCAGGGACCGAGTCTGGCCCATGCATTGGAGCCGCCTTGGCCAAGACACCAGAGAGACCGAGCTGGAAGGTGAGGATCTGCTCCCCTGCTGTCCCCAGGCTTCGAGGTGAAGAGCCAGCGAATCTGAAAGA
Seq A exon
CCTGTTGCTTTCTGAGACTCTCTTCGGTTGTCTGTCTTTACTTCGGAAATCGAAGGAATACAGCAAAGTTAGGGGTTCCAAGTTGTTCGGTCGCTTGGCGGCTTTCTGTTATCGCTTGTCTTCCTGCAAAGTGGTGCTGCCCCGTTGGGAATCTCTTCCAG
Seq C2 exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACAGTGACTTTGTCTCCAAAGCGTCCAGATTATCGCCGCCTGGGGCTATATCCTCCGGGAGGACCTGCCCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-'4-2,'4-1,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCAGCTGATGCATTCT
R:
CAGGCGGCGATAATCTGGAC
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]