RnoALTD0034521-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45849846-45851730:-
Coord C1 exon
chr10:45851596-45851730
Coord A exon
chr10:45851534-45851595
Coord C2 exon
chr10:45849846-45849951
Length
62 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
3' ss Seq
ACATATTTTTTTTTCTTCAGTTC
3' ss Score
9
Exon sequences
Seq C1 exon
GCGTCTCCCTTCGCTCCCAAGCCCAGCTGATGCATTCTAGAGGATCACGAGACAGGGTTGGCCTGGCCAGGGACCGAGTCTGGCCCATGCATTGGAGCCGCCTTGGCCAAGACACCAGAGAGACCGAGCTGGAAG
Seq A exon
GTGAGGATCTGCTCCCCTGCTGTCCCCAGGCTTCGAGGTGAAGAGCCAGCGAATCTGAAAGA
Seq C2 exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACAGTGACTTTGTCTCCAAAGCGTCCAGATTATCGCCGCCTGGGGCTATATCCTCCGGGAGGACCTGCCCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-2-2,3-2,4-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCAAGACACCAGAGAGA
R:
CTTTGATGGGCAGGTCCTCC
Band lengths:
139-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]