Special

MmuEX0053944 @ mm9

Exon Skipping

Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126592825-126625723:-
Coord C1 exon
chr4:126625678-126625723
Coord A exon
chr4:126602746-126603267
Coord C2 exon
chr4:126592825-126592909
Length
522 bp
Sequences
Splice sites
3' ss Seq
ACAGTTTCTTACTTTTTAAGGTG
3' ss Score
9.52
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
Seq A exon
GTGGTGTCATGGATACAGAAATGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTGTAGTTCAAAGGACAACCTTGTTTCTTCAGTTCACACTGATGGTAGTTTGGAAGTAGAGAGAAGAGCTGCTCATCAGGAATCAGACAATGAAAATGAAATACAAATTCAAAATCAGTTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq C2 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446_MULTIEX2-3/5=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.562 A=0.699 C2=0.575
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF047807=DUF629=FE(36.6=100)

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101714





     
                   









    
Main Skipping Isoform:
ENSMUSP00000101714f4383A





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000030630, ENSMUSP00000101714f4382A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:35358925-35359446 
ALTERNATIVE
HsaEX0072912
(ZMYM4)
Human
(hg19)
chr1:35824526-35825047 
ALTERNATIVE
HsaEX0072912
(ZMYM4)
Rat
(rn6)
chr5:144942183-144942686 
HIGH PSI
RnoEX0102052
(Zmym4)
Cow
(bosTau6)
chr3:110988061-110988585 
ALTERNATIVE
BtaEX0041040
(ZMYM4)
Chicken
(galGal4)
chr23:4324049-4324566 
HIGH PSI
GgaEX1000563
([1])
Chicken
(galGal3)
chr23:4693649-4694170 
HIGH PSI
GgaEX1000563
([2])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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