RnoEX0102052 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144932448-144969360:-
Coord C1 exon
chr5:144969315-144969360
Coord A exon
chr5:144942183-144942704
Coord C2 exon
chr5:144932448-144932532
Length
522 bp
Sequences
Splice sites
3' ss Seq
ACAGTTTCTTACTTTTTAAGGTG
3' ss Score
9.52
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
Seq A exon
GTGGTGTCATGGATACAGAAATGTCTGAAGACACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAGTCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAGCTCATACTGATGGTAGTTTGGAGATAGAGAGAAGAGCTTCTCATCATGAATCAGACAATGAAAATGAAATACAAATTCAAAGTCAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGCGAAAAACGATTGGATAAACCCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq C2 exon
GAGTATGGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX1-4/8=1-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=0.688 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]