MmuEX0054156 @ mm10
Exon Skipping
Gene
ENSMUSG00000045466 | Zfp956
Description
zinc finger protein 956 [Source:MGI Symbol;Acc:MGI:2141515]
Coordinates
chr6:47955817-47962632:+
Coord C1 exon
chr6:47955817-47956170
Coord A exon
chr6:47957667-47957724
Coord C2 exon
chr6:47962525-47962632
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCCTCCATGTATTTCCTCAGTGA
3' ss Score
6.89
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GACTGGCATATGGGGACTGACCTCCAACAACAGACCCAGATCCAGTCTGCAGAGATCTCCCTTCTAGCTATCCTATCTGCTGTTCAGGCAGTGGAAAAGAAAACAGAGTCCCAGGCTGTCCACCTTCAAAACTTGGAAGTAAGAACAGGGTCAGCTGAGAAGAAGTTGGCTGACTTCGAGAAGACGGCCATGGAGCTCAGCAGCCAGCTGGAGGGCAAGTGGGCTGTTCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAACGGCGGCTGGAGAACCTGGAGAATCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTCCCCCCCAGCAGCAGGGATGAAGCCCCCAAG
Seq A exon
TGACTCTTGGATCTAAGAACCAGAGCAAATTGATCCTCTGCCTTCAAGCTGGTAGAAG
Seq C2 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTATGTGAGAAGAGCCTGCAGGAGACAGCCAGTGCATCCCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045466_MULTIEX1-3/5=1-C2
Average complexity
ME(2-3[100=96])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.368 C2=0.192
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=67.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAAAACCGGAACCCCTG
R:
TCCTGCAGGCTCTTCTCACAT
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types