MmuEX0053739 @ mm10
Exon Skipping
Gene
ENSMUSG00000045466 | Zfp956
Description
zinc finger protein 956 [Source:MGI Symbol;Acc:MGI:2141515]
Coordinates
chr6:47955817-47962632:+
Coord C1 exon
chr6:47955817-47956170
Coord A exon
chr6:47957476-47957602
Coord C2 exon
chr6:47962525-47962632
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGGACTTGTATTCCTCCAGGTT
3' ss Score
6.57
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GACTGGCATATGGGGACTGACCTCCAACAACAGACCCAGATCCAGTCTGCAGAGATCTCCCTTCTAGCTATCCTATCTGCTGTTCAGGCAGTGGAAAAGAAAACAGAGTCCCAGGCTGTCCACCTTCAAAACTTGGAAGTAAGAACAGGGTCAGCTGAGAAGAAGTTGGCTGACTTCGAGAAGACGGCCATGGAGCTCAGCAGCCAGCTGGAGGGCAAGTGGGCTGTTCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAACGGCGGCTGGAGAACCTGGAGAATCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTCCCCCCCAGCAGCAGGGATGAAGCCCCCAAG
Seq A exon
GTTTCTGTGACTACTGAAGAGGTGGCTGGGTGTTTCCCTGAGCAACAGGAAGGTAGCCCAGAAGACTGGCAGAAGGAACTCTGCAAGCGCGTAGCAAAGGAAAGGCGTGAGGTGCTAGGCTCTCTAG
Seq C2 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTATGTGAGAAGAGCCTGCAGGAGACAGCCAGTGCATCCCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045466_MULTIEX1-2/5=1-C2
Average complexity
ME(2-3[100=96])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.508 C2=0.192
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=67.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGACTTCGAGAAGACG
R:
TCCTCTTGCTTGATCCAGGGA
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types